Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,324,629 – 2,324,719 |
Length | 90 |
Max. P | 0.518266 |
Location | 2,324,629 – 2,324,719 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.90 |
Mean single sequence MFE | -15.92 |
Consensus MFE | -12.82 |
Energy contribution | -12.82 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.81 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2324629 90 - 22224390 AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA-----------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC .....((((((.....((.((.((((...............-----------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.46) >DroSec_CAF1 22813 90 - 1 AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA-----------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC .....((((((.....((.((.((((...............-----------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.46) >DroSim_CAF1 25371 90 - 1 AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA-----------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC .....((((((.....((.((.((((...............-----------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.46) >DroEre_CAF1 24819 85 - 1 AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAA----------------------AAACCAAUACCAAUGCCAA-ACCUGAAACCGGAGAGCAUUCCC------------AUUUUCC .....((((((.....((.((.((((..........----------------------.........))))))))..-.))))))...((((((.......------------.)))))) ( -14.71) >DroYak_CAF1 24870 120 - 1 AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAUACCAAAACCAAACCAAAAGCAAAGCCAAUACCAAUGCCAAAACCUGAAACUGGAGAGCAUUCCCAUUCCCGUUCCCAUUUUCC .........((((((.(((...(((((.................................)))))....(((((.....((.......))...))))).....))).))))))....... ( -21.51) >consensus AUGCAUUCAGGGAACCGGACACUUGGCCAAAACCAAAACUA_________________AAACCAAUACCAAUGCCAA_ACCUGAAACCGGAGAGCAUUCCC____________AUUUUCC .....((((((.....((.((.((((.........................................))))))))....))))))...((((....)))).................... (-12.82 = -12.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006