Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 333,032 – 333,152 |
Length | 120 |
Max. P | 0.596285 |
Location | 333,032 – 333,152 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -44.00 |
Consensus MFE | -39.88 |
Energy contribution | -40.16 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.15 |
Structure conservation index | 0.91 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 333032 120 + 22224390 UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGUCCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGGUGGGUGGAAACCAAUUCCCGGU ..........(((((.(((((.(.(((.((..(......)..)).))).)..(((.(((((((((((.......)))))..((((......)))).)))))).)))..))))).))))). ( -45.90) >DroSec_CAF1 473 120 + 1 UUUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGUUGGGUGGAAACCAAUUCCCGGU ..........(((((.(((((.(.(((.((..(......)..)).))).)..((((.((((.((((((...)))((((....))))...))).))))..)))).....))))).))))). ( -44.80) >DroSim_CAF1 288 120 + 1 UUUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGGUGGGUGGAAACCAAUUCCCGGU ..........(((((.(((((.(.(((.((..(......)..)).))).)..(((((((((.((((((...)))((((....))))...))).))))).)))).....))))).))))). ( -45.80) >DroEre_CAF1 481 120 + 1 UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGUACAAACAGUUGGUGGGUGAAAACCAAUUCCCGGU ..........(((((.(((((.(.(((.((..(......)..)).))).)..((((.(((.((((((.......)))))).(((((....)))))))).)))).....))))).))))). ( -44.10) >DroYak_CAF1 442 120 + 1 UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAAACCCUCCUCCGACAUCAAAAAUACGGCAUGCUGUACCGACAGAGGGUGGGUGAAUACCAAUUCCCGGU ..........(((((.(((((.(.(((.((..(......)..)).))).)..(((((((((.(....).....(((((....)))))......))))).)))).....))))).))))). ( -39.40) >consensus UCUCUCGUUUCCGGGCAUUGGAGGUGCUGGGCUGAUAAAACUCCUGCAGCAGACCCUCCACCGUCGUCAAAGAUGCGGCGUGCUGCACAGACAGUGGGUGGGUGGAAACCAAUUCCCGGU ..........(((((.(((((.(.(((.((..(......)..)).))).)..(((((((((.(((........(((((....)))))..))).))))).)))).....))))).))))). (-39.88 = -40.16 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:40 2006