Locus 8299

Sequence ID X_DroMel_CAF1
Location 20,638,539 – 20,638,652
Length 113
Max. P 0.549699
window13625

overview

Window 5

Location 20,638,539 – 20,638,652
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.38
Mean single sequence MFE -22.06
Consensus MFE -16.79
Energy contribution -16.10
Covariance contribution -0.69
Combinations/Pair 1.18
Mean z-score -1.50
Structure conservation index 0.76
SVM decision value 0.03
SVM RNA-class probability 0.549699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20638539 113 + 22224390
UUUAAUCACGAAACAGUUCUGGAUAACGUGUUUAGUUCCAAUUAAUAAUUCACUCAUCAAGAUUUCUUGGACGUGAUUAACAUGCUACAGCAAAAGCAACUG-------UAGUCUCAAGU
.(((((((((.........((((..((.......))))))................(((((....))))).)))))))))...(((((((.........)))-------))))....... ( -23.90)
>DroSec_CAF1 42758 103 + 1
UUUAAUCACGAAACAGUUCUGGAUAACGUGUUUAGUUCCAACUAAUAAUUCACUCAUCAAGAUUUCUUGGACGUGAUUAACAUGCUACAGCAAAAGCAGCUG-------U----------
.(((((((((.................(((.(((((....))))).....)))...(((((....))))).)))))))))......(((((.......))))-------)---------- ( -23.00)
>DroEre_CAF1 43484 120 + 1
CUUAAUCACGAAACUGUUCUGGAUAACGUGUUUAGUUCCAAUUAAUAAUUACCUCAUCAAGAUUACUUGGAAGUGGUUAACACGUUACAGCAAAAGUAACUGCAAAUCCUAAUCUCAAAU
....................((((((((((((((.((((((.((((...............)))).)))))).))...))))))))...(((........)))..))))........... ( -21.56)
>DroYak_CAF1 44450 107 + 1
CCUAAUCACGAAACUCUUCUGGAUAACGUGCUUAGUUCCAAUUAGUAAAUCACUCAUCAAGAUUUCUUGGAUGUGGUUAGCAUGCUACAGCAAAAGUA-------------AUCUCAAAU
.((((.((((..(..(....)..)..)))).)))).........((.((((((...(((((....)))))..)))))).)).(((....)))......-------------......... ( -19.80)
>consensus
CUUAAUCACGAAACAGUUCUGGAUAACGUGUUUAGUUCCAAUUAAUAAUUCACUCAUCAAGAUUUCUUGGACGUGAUUAACAUGCUACAGCAAAAGCAACUG_______U_AUCUCAAAU
.(((((((((.........((((..((.......))))))................(((((....))))).)))))))))...((....))............................. (-16.79 = -16.10 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:27 2006