Locus 8298

Sequence ID X_DroMel_CAF1
Location 20,629,643 – 20,629,756
Length 113
Max. P 0.953063
window13624

overview

Window 4

Location 20,629,643 – 20,629,756
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 95.28
Mean single sequence MFE -27.17
Consensus MFE -25.52
Energy contribution -26.77
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.94
SVM decision value 1.43
SVM RNA-class probability 0.953063
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20629643 113 - 22224390
CAAUUUUCACCCACUUGUGCAACCCUAAGCACCAAAUCGAUCAACCUGACCCCGGUUGUCGAACUUGACUUUGCCACUUGCCCGGCCCUCGAAUGCUCCAUUAUGGGCUCCUC
(((...(((.......((((........))))....((((.(((((.......)))))))))...)))..)))..........(((((...((((...))))..))))).... ( -24.30)
>DroSec_CAF1 33753 113 - 1
CAAUUUUCGCCCACAUGUGCAACCCUAAGCCCCAAAUCGAUCAACCUGACCCCGGUUGUCGAACUUGACUUUGCCACUUGCCCGGCCCUCGAAUGCUCCAUUAUGGGCUCCUC
........(((((.(((.(((...............((((.(((((.......)))))))))..((((....(((........)))..)))).)))..)))..)))))..... ( -27.20)
>DroEre_CAF1 33806 113 - 1
CAAUUUUCGCCCACAUGUGCAACCCUAAUCCCCAAAUCGAUCAACCUGACCCCGCUUGUCGAACUUGACUUUGCCACUUGCCCGGCCCUCGAAUGCUCCAUUGUGGGCUCCUU
........(((((((((.(((...............((((.(((.(.......).)))))))..((((....(((........)))..)))).)))..)).)))))))..... ( -25.10)
>DroYak_CAF1 34705 113 - 1
CAAUUCUCGCCCACAUGUGCAACCCUAAUCCCCAAAUCGAUCAACCUGACCCCGGUUGUCGAACUUGACUUUGCCUCUUGCCCGGCCCUCGAAUGCUCCAUUGUGGGCACCUC
........(((((((((.(((...............((((.(((((.......)))))))))..((((....(((........)))..)))).)))..)).)))))))..... ( -32.10)
>consensus
CAAUUUUCGCCCACAUGUGCAACCCUAAGCCCCAAAUCGAUCAACCUGACCCCGGUUGUCGAACUUGACUUUGCCACUUGCCCGGCCCUCGAAUGCUCCAUUAUGGGCUCCUC
........(((((((.(.(((...............((((.(((((.......)))))))))..((((....(((........)))..)))).))).)...)))))))..... (-25.52 = -26.77 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:26 2006