Locus 8296

Sequence ID X_DroMel_CAF1
Location 20,629,279 – 20,629,373
Length 94
Max. P 0.620637
window13621

overview

Window 1

Location 20,629,279 – 20,629,373
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 86.70
Mean single sequence MFE -31.20
Consensus MFE -21.11
Energy contribution -21.93
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.68
SVM decision value 0.18
SVM RNA-class probability 0.620637
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20629279 94 - 22224390
UUAUGGGGCGGGGGCGGGGGGCUAGGGGCUUAGAAGGCAAAUAUUCGUUUAUGGGUCUUUUCGCCCUGCUCUUUUCGGGAUCCGUUCCGACAAU
...(((((((((..((..(((...(((((..(((((((..(((......)))..))))))).)))))...)))..))...)))))))))..... ( -38.10)
>DroSec_CAF1 33424 84 - 1
----------GUGGCGGGAGGCUAGGGGCUUAGAAGGCAAAUAUUCGUUUAUGGGUCUUUUCGCCCUGCUCUUCUCGGGAUCCGUUCCGACAAU
----------....(((((((...(((((..(((((((..(((......)))..))))))).)))))...)))))))(((.....)))...... ( -30.00)
>DroEre_CAF1 33467 84 - 1
----------GUGGGGAGAGGCUAGGGGCUUAGACGGCAAAUAUUCGUUUAUGGCUCUUUUUGCCCUGCUCUUUUCGGGAUCCAUGCCGGCAAU
----------..(((.((.(((.((((((((((((((.......))))))).)))))))...))))).)))...((((........)))).... ( -27.50)
>DroYak_CAF1 34312 84 - 1
----------GCGGGGAGAGGCUAGGGGCUUAGAUGGCAAAUAUUCGUUUAUGGCUCUUUUCGCCCUGCUCUUUUCGGGAUCCGUUCCGGCAAU
----------((((((.(((...((((((((((((((.......))))))).)))))))))).)))))).....((((((....)))))).... ( -29.20)
>consensus
__________GUGGCGAGAGGCUAGGGGCUUAGAAGGCAAAUAUUCGUUUAUGGCUCUUUUCGCCCUGCUCUUUUCGGGAUCCGUUCCGACAAU
............(..(((((....(((((..(((((((..(((......)))..))))))).))))).)))))..)((((....))))...... (-21.11 = -21.93 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:23 2006