Locus 8295

Sequence ID X_DroMel_CAF1
Location 20,628,430 – 20,628,536
Length 106
Max. P 0.582672
window13620

overview

Window 0

Location 20,628,430 – 20,628,536
Length 106
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 82.84
Mean single sequence MFE -29.84
Consensus MFE -15.48
Energy contribution -16.96
Covariance contribution 1.48
Combinations/Pair 1.24
Mean z-score -2.24
Structure conservation index 0.52
SVM decision value 0.10
SVM RNA-class probability 0.582672
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20628430 106 + 22224390
UAUGCAUGUCUGUGGGUAUUUUCCAAAGUAUCAGUGU------GAGUGUGUGCGAGUGCUGGUAUUUACAUGCUUACAUUUCAUACGAGCGUAAGAAAAUAUUUGCAGUUAC
.........(((..(((((((((..(((((((((..(------..((....))..)..)))))))))..((((((...........))))))..)))))))))..))).... ( -31.30)
>DroPse_CAF1 35335 90 + 1
UAUGCAUGUCAGUCCG----------------GGUGG------GGGGUGGUGGGGGGUCUGGUAUUUACAUGCUUGCAUUUCAUACAAGCAUAAGAAAAUAUUUGCAGUUGU
(((((.(((((.(((.----------------.....------))).))(((..(.((..(((((....))))).)).)..)))))).)))))................... ( -18.90)
>DroSec_CAF1 32571 106 + 1
UAUGCAUGUCUGUGGGUAUUUUCCAAAGUAUCAGUGU------GAGUGUGUGCGAGUGCUGGUAUUUACAUGCUUACAUUUCAUACGAGCGUAAGAAAAUAUUUGCAGUUAU
.....(((.(((..(((((((((..(((((((((..(------..((....))..)..)))))))))..((((((...........))))))..)))))))))..))).))) ( -31.40)
>DroEre_CAF1 32632 106 + 1
UAUGCAUGUCUGUGGGUGUUUUCCAAAGUAUCAUUGC------GAGUGUGUGCGAGUGCUGGUAUUUACAUGCUUACAUUUCAUACGAGCGAAAGAAAAUAUUUGCAGUCAU
.....(((.(((..(((((((((....(((....)))------(..((((((.(((((..(((((....)))))..)))))))))))..)....)))))))))..))).))) ( -32.40)
>DroYak_CAF1 33462 112 + 1
UAUGCAUGUCUGUGGGUGUUUUCCGAAGUAUCAGUGUGUGUAUGAGUGUGUGCGAGUGCUGGUAUUUAUAUGCUUACAUUUCAUACGAGCGUAAGAAAAUAUUUGCAGUUAU
.....(((.(((..(((((((((..(((((((((..(.(((((......))))).)..))))))))).(((((((...........))))))).)))))))))..))).))) ( -35.20)
>consensus
UAUGCAUGUCUGUGGGUAUUUUCCAAAGUAUCAGUGU______GAGUGUGUGCGAGUGCUGGUAUUUACAUGCUUACAUUUCAUACGAGCGUAAGAAAAUAUUUGCAGUUAU
.....(((.((((..((((((((......................(((.((((.(....).)))).)))((((((...........))))))..))))))))..)))).))) (-15.48 = -16.96 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:22 2006