| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,627,921 – 20,628,097 |
| Length | 176 |
| Max. P | 0.749695 |
| Location | 20,627,921 – 20,628,028 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.74 |
| Mean single sequence MFE | -37.89 |
| Consensus MFE | -26.17 |
| Energy contribution | -26.30 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20627921 107 - 22224390 AGGAGGGGCGCAA-AGGGGGCGUGGCCAAAAAUCACCAUAAACGCCGC------CAGGACGGCAGAAGUCGUCCAUUCACUUUACAUUUUGUUUUUUAAAGUGCCUCGAAAAUU ....(((((((..-.((.(((((..................))))).)------).(((((((....)))))))..........................)))))))....... ( -37.97) >DroSec_CAF1 32053 107 - 1 AGGAGGGGCGCAA-GGGGGGCGUGGCCCAACAUCAGCAUAAACGCCAAGUUGUAGUGGGCGGCAGAAGUCGUCCUUGCACUUUACAUUUUGGUUUUUAAAGUGACUCG------ ..((((((.((((-(((.(((((.(((((....((((...........))))...))))).))....))).))))))).)))..(((((((.....))))))).))).------ ( -38.10) >DroEre_CAF1 32074 113 - 1 GAGAG-GGCGCGAAAGGGGGCGUGGCCCCACAUCAGCAUAAAUGCCAAGUUGUGGAGGGCGGCAGAAGUCGUCCUUGCACUUUACAUUUCGGGUUUUAAAGUGACUCGGAAACU .....-(((((....)(((((...))))).............))))..((.((((((((((((....))))))))).)))...)).(((((((((.......)))))))))... ( -41.70) >DroYak_CAF1 32936 110 - 1 AAGAGGGGCGCAAGAGGGGGCGUGGCCCAGCAUCAGCAUAAAUGCCAAGUUGUAGUGGGCGGCAGAAGUCGGCCUUGCACUUUACAUUUGGGUUUUUAAAGUGACUCGAA---- ..(((...(((..((..((((...))))....))(((.((((((..((((.((((.((.((((....)))).))))))))))..)))))).)))......))).)))...---- ( -33.80) >consensus AAGAGGGGCGCAA_AGGGGGCGUGGCCCAACAUCAGCAUAAACGCCAAGUUGUAGAGGGCGGCAGAAGUCGUCCUUGCACUUUACAUUUUGGUUUUUAAAGUGACUCGAA____ ..(((.(((((....).((((...))))..............))))..........(((((((....)))))))...(((((((.(........).))))))).)))....... (-26.17 = -26.30 + 0.13)
| Location | 20,627,989 – 20,628,097 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 89.18 |
| Mean single sequence MFE | -34.30 |
| Consensus MFE | -27.09 |
| Energy contribution | -26.78 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20627989 108 - 22224390 AAACAAAUAUGGAAAUUGCUGCCGCUGUUUCUGCUGUUUUAAAGGAAGCUGAAUGACAAGCAGUCGCCCAGGAGGGGCGCAA-AGGGGGCGUGGCCAAAAAUCACCAUA .......(((((..(((...(((((.((..((((((((....((....))....))).))).(.(((((.....))))))..-.))..)))))))....)))..))))) ( -35.00) >DroSec_CAF1 32121 106 - 1 AAACAAAUAUGGAAAUUGCUGCCGCUGUUUGUGCUGUUUUGA--GGAGCUGAAUGACAAGCAGUCGCCCAGGAGGGGCGCAA-GGGGGGCGUGGCCCAACAUCAGCAUA ................((((((((((((((((.(.((((...--.)))).)....)))))))))(((((.....)))))...-)).((((...)))).....))))).. ( -33.70) >DroEre_CAF1 32148 106 - 1 AAACAAAUAUGGAAAUUGCUGCCGUUGUUUGUGCUGUUUUGA--GGAGCUGAAUGACAAGCAGCCGCCUGAGAG-GGCGCGAAAGGGGGCGUGGCCCCACAUCAGCAUA ................(((((((.(..((((((((.((((.(--((.((((.........))))..))))))).-))))))))..).)))(((....)))...)))).. ( -36.40) >DroYak_CAF1 33006 107 - 1 AAACAAAUAUGGAAAUUGCUGCCGCUGUUUGUGCUGCGUUGA--GGAGCUGAAUGACAAGUAGUCGCCUAAGAGGGGCGCAAGAGGGGGCGUGGCCCAGCAUCAGCAUA ................(((((..(((.((((((((.(....(--((.((((.........))))..)))....).))))))))...((((...)))))))..))))).. ( -32.10) >consensus AAACAAAUAUGGAAAUUGCUGCCGCUGUUUGUGCUGUUUUGA__GGAGCUGAAUGACAAGCAGUCGCCCAAGAGGGGCGCAA_AGGGGGCGUGGCCCAACAUCAGCAUA ..........((....((((.(((((((((((.(.(((((....))))).)....)))))))))(((((.....))))).....)).))))...))............. (-27.09 = -26.78 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:21 2006