Locus 8292

Sequence ID X_DroMel_CAF1
Location 20,626,924 – 20,627,026
Length 102
Max. P 0.800405
window13615

overview

Window 5

Location 20,626,924 – 20,627,026
Length 102
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 87.80
Mean single sequence MFE -25.47
Consensus MFE -20.02
Energy contribution -20.65
Covariance contribution 0.63
Combinations/Pair 1.08
Mean z-score -1.83
Structure conservation index 0.79
SVM decision value 0.61
SVM RNA-class probability 0.800405
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20626924 102 - 22224390
AUCUUAGGCAGAUCUCCGGCAUAUCAAUUGCCAGUUCAAUUUGCAAAUUUCUCCAUCACAGACAAUGAGCAAAUGGAACACUGAGAGAAAAGU-CUGCGGAAU
.......((((((((((((((.......)))).((((.((((((..((((((.......))).)))..)))))).))))...).))))....)-))))..... ( -28.10)
>DroSec_CAF1 31057 102 - 1
AUGUUAGGCAGAUCUCCGGCAUAUCAAUUGCCAGUUCAAUUUGCAAAUUUCUGCAUCACAGACAAUGAGCAAGUGGAACACUGAGAGAAAAGU-UUGCAGAUC
.......((((((((((((((.......)))).((((.((((((..(((((((.....)))).)))..)))))).))))...).))))....)-))))..... ( -28.90)
>DroEre_CAF1 31073 101 - 1
AUGUUUGGCAGUUCUCUGGCAUAUCAAUGGCCCGUUAAAUUUGCAAAUUUCUGCAUCACAGACAAUGAGCAAAUGGAGCACUGAGAGAAAAAUUCA--GAACC
...(((((...(((((((((.........))).(((..((((((..(((((((.....)))).)))..))))))..)))....))))))....)))--))... ( -24.40)
>DroYak_CAF1 31896 102 - 1
AUGUUAGGCAGAUCUCUGGCAUAUCAAUUGCCCGUUCAAUUUCCAAAUUUCUGCCUCACAGACAAUGAGCAAAUGGAACACUGUGAGAAAAAU-CAGCGGAUC
.(((.(((((((...(.((((.......)))).)...............))))))).)))....................((((((......)-)).)))... ( -20.47)
>consensus
AUGUUAGGCAGAUCUCCGGCAUAUCAAUUGCCAGUUCAAUUUGCAAAUUUCUGCAUCACAGACAAUGAGCAAAUGGAACACUGAGAGAAAAAU_CAGCGGAUC
............((((.((((.......)))).((((.((((((..(((((((.....)))).)))..)))))).)))).....))))............... (-20.02 = -20.65 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:18 2006