| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,626,078 – 20,626,188 |
| Length | 110 |
| Max. P | 0.944968 |
| Location | 20,626,078 – 20,626,188 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.85 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -15.82 |
| Energy contribution | -16.27 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20626078 110 - 22224390 GAUGCCCAGCGAUAUCCCUUUCACUACCCAACAUCACAACC-UGUUAGCCAGCACUUAG-GCCAAAGACCAUUUGGUCAUCGCAAAUUGGCCCAUUCAGUUGGCCGCCCACC- ........(((..................((((........-)))).((((((.....(-(((((.((((....))))........))))))......))))))))).....- ( -24.80) >DroSec_CAF1 30211 112 - 1 GAUGCCCAGCGAUAUUCCUUCCACUAUCCAACAUCGCUCCC-CGUUAGCCAGCACUUAGGGCCAAAGACCAUUUGAUCAUCACAAAUUGGCCCAUUCAGCUGCCCUCCCACCA ((((...((((((...................))))))...-))))...((((.....((((((......(((((.......))))))))))).....))))........... ( -22.11) >DroYak_CAF1 31052 94 - 1 -------------------CCCACUUCCCAACUUCACUCUCAUGUUGGCCAGCACUUAGGGCCAAGGACCAUUUCGGCAUCGCAAAUUGGCCCAUUCAGUUGGCCGCCCAGCA -------------------...........................(((((((.....(((((((.(.((.....)).....)...))))))).....)))))))........ ( -25.80) >consensus GAUGCCCAGCGAUAU_CCUUCCACUACCCAACAUCACUCCC_UGUUAGCCAGCACUUAGGGCCAAAGACCAUUUGGUCAUCGCAAAUUGGCCCAUUCAGUUGGCCGCCCACCA ...............................................((((((.....(((((((.....................))))))).....))))))......... (-15.82 = -16.27 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:17 2006