Locus 8290

Sequence ID X_DroMel_CAF1
Location 20,624,101 – 20,624,219
Length 118
Max. P 0.626004
window13613

overview

Window 3

Location 20,624,101 – 20,624,219
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 82.70
Mean single sequence MFE -30.85
Consensus MFE -20.77
Energy contribution -21.15
Covariance contribution 0.38
Combinations/Pair 1.17
Mean z-score -1.69
Structure conservation index 0.67
SVM decision value 0.19
SVM RNA-class probability 0.626004
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20624101 118 + 22224390
ACGAUCCAAAAAAACGCUCGUUGAAAUUAGCUGUGAAAUGCCGACAGGCAUGGGUACAUUGCUCAAAACACGGCGAAAAACGGUCGUGAAUAUAACGUUCGACACGUUGUCAUCGAUA
.((((........(((..((((.......((((((..(((((....)))))((((.....))))....))))))....))))..)))....(((((((.....))))))).))))... ( -33.60)
>DroSec_CAF1 28236 117 + 1
ACGAUCCAAA-AAACGCUCGUUGAAAUUAGCUGUGAAAUGCCGACAGGCAUGGGUACAGUGCUCAAAGCAUGGUGAUAAACAAUCGGGAAUAUCACGUUCGAUACGUUGUCAUCGAUA
...(((....-....(((..((((.....((((((..(((((....)))))...))))))..)))))))..((((((((...((((((.........))))))...))))))))))). ( -32.50)
>DroSim_CAF1 7998 117 + 1
ACGAUCCAAA-AAACGCUCGUUGAAAUUAGCUGUGAAAUGCCGACAGGCAUGGGUACAGUGCUCAAAGCAUGGUGAUAAACAAUCGGGAAUAUCACGUUCGAUACGUUGUCAUCGAUA
...(((....-....(((..((((.....((((((..(((((....)))))...))))))..)))))))..((((((((...((((((.........))))))...))))))))))). ( -32.50)
>DroYak_CAF1 29025 97 + 1
ACGAUCCGAA-AAACGCUCGUUGAAAUUAGCUGUGAAAUGCCGACAGGCUUGGGUACACUGCUCAAAACACUGCGAAAGUCAGUCGGGAGUAU--------------------UGCUA
..........-..((.((((((((.....((.(((....(((....)))((((((.....))))))..))).)).....)))).)))).))..--------------------..... ( -24.80)
>consensus
ACGAUCCAAA_AAACGCUCGUUGAAAUUAGCUGUGAAAUGCCGACAGGCAUGGGUACAGUGCUCAAAACACGGCGAAAAACAAUCGGGAAUAUCACGUUCGAUACGUUGUCAUCGAUA
.((((...........(((((((......((((((..(((((....)))))((((.....))))....))))))......))).))))......((((.....))))....))))... (-20.77 = -21.15 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:16 2006