Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,317,798 – 2,317,893 |
Length | 95 |
Max. P | 0.961291 |
Location | 2,317,798 – 2,317,893 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.98 |
Mean single sequence MFE | -21.51 |
Consensus MFE | -16.92 |
Energy contribution | -16.68 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.28 |
Structure conservation index | 0.79 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2317798 95 - 22224390 CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG--------UCGCAUAACAAUAAAAAAAAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG ......(((((......)))))....((((.....((((.--------((...................)).))))....(((((....)))))..))))... ( -21.61) >DroSec_CAF1 16149 92 - 1 CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG--------UCGCACAACAAUAAA---AAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG ......(((((......)))))....((((.....((((.--------((.............---...)).))))....(((((....)))))..))))... ( -21.79) >DroSim_CAF1 16963 92 - 1 CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG--------UCGCACAACAAUAAA---AAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG ......(((((......)))))....((((.....((((.--------((.............---...)).))))....(((((....)))))..))))... ( -21.79) >DroEre_CAF1 17763 100 - 1 CGAAAAUAGAUAAUAUGAUCUAAUAAAACUGAAAGAGCGGUCGGUCGGUCGCACAACAAUAAA---AAAGAGCGAUACAAAGGCGGAGCCGCCUCAGGUGGAA ......(((((......)))))......((((..(.((((((.(((.(((((...........---.....))))).....))).)).)))))))))...... ( -24.19) >DroYak_CAF1 17572 92 - 1 CGAAAAUAGAUAAUAUGAUCUAAUAAAACUGAAAGAGCGG--------UCGCACAACAAUAAA---AAAGAGCGAUACAAAGGCGGAGCCGCCUUAGGUGGGC ......(((((......)))))..............((.(--------((((...........---.....))))).(.((((((....)))))).)....)) ( -18.19) >consensus CGAAAAUAGAUAAUAUGAUCUAAUAAAACCGAAAGAGCGG________UCGCACAACAAUAAA___AAAGAGCGCUACAAAGGCGGAGCCGCCUCAGGUUCAG ......(((((......))))).....(((......((((........))))............................(((((....)))))..))).... (-16.92 = -16.68 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006