Locus 8288

Sequence ID X_DroMel_CAF1
Location 20,615,984 – 20,616,083
Length 99
Max. P 0.975072
window13611

overview

Window 1

Location 20,615,984 – 20,616,083
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -27.96
Consensus MFE -25.18
Energy contribution -25.82
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.68
Structure conservation index 0.90
SVM decision value 1.74
SVM RNA-class probability 0.975072
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20615984 99 + 22224390
UACAGAUAUUUUUGCAUUGUUACUCGACGAUGGUUAUUUGGGGUUAGACCCCCAAAUUACGGCGGUCUACAGGCAUCUGUCUGGUUCCGAAGUUUACAC
..((((....))))(((((((....)))))))((.((((((((......)))))))).))..(((....(((((....)))))...))).......... ( -29.10)
>DroSec_CAF1 20607 99 + 1
UACAGAUAUUUUUACAUUGUUACUCGACGAUGGUUAUUUGGGGUUAGGCCCCCAAAUUACGGCGAUCUACAGGCAUCUGUCUGGUUCCGAAGUUUACAC
...((((.......(((((((....)))))))((.((((((((......)))))))).))....)))).(((((....)))))................ ( -26.80)
>DroSim_CAF1 1684 99 + 1
UACAGAUAUUUUUACAUUGUUACUCGACGAUGGUUAUUUGGGGUUAGGCCCCCAAAUUACGGCGAUCUACAGGCAUCUGUCUGGUUCCGAAGUUUACAC
...((((.......(((((((....)))))))((.((((((((......)))))))).))....)))).(((((....)))))................ ( -26.80)
>DroEre_CAF1 20681 99 + 1
UACAGAUAUUUUUGCAUUGUUACUCGACGAUGGUUAUUUGGGGUUAGACCCCCAAAUUACGACGGUCCACAGGCAUCUGUCUGGUUCCGAAGUUUACAC
..((((....))))(((((((....)))))))((.((((((((......)))))))).))..(((..(.(((((....))))))..))).......... ( -30.50)
>DroYak_CAF1 21185 98 + 1
UACAGAUAUUUUUGCAUUGAUACUCGAUGAUGGUUAGUUGGGGUUAG-CCCCCAAAUUACGACGGUCCACAGGCAUCUGUCUGGUUCCGAAGUUUACAC
..((((....))))(((((.....)))))...((...((((((....-.))))))...))..(((..(.(((((....))))))..))).......... ( -26.60)
>consensus
UACAGAUAUUUUUGCAUUGUUACUCGACGAUGGUUAUUUGGGGUUAGACCCCCAAAUUACGGCGGUCUACAGGCAUCUGUCUGGUUCCGAAGUUUACAC
..............(((((((....)))))))((.((((((((......)))))))).))..(((....(((((....)))))...))).......... (-25.18 = -25.82 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:14 2006