Locus 8287

Sequence ID X_DroMel_CAF1
Location 20,614,585 – 20,614,687
Length 102
Max. P 0.878331
window13610

overview

Window 0

Location 20,614,585 – 20,614,687
Length 102
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 90.07
Mean single sequence MFE -28.08
Consensus MFE -23.04
Energy contribution -22.48
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -1.73
Structure conservation index 0.82
SVM decision value 0.90
SVM RNA-class probability 0.878331
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20614585 102 + 22224390
AUCGUCGAUAUUUUUGUACCAGGUAUUCUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUAGAACUGGUA------------CUGGUACAGCUAGUGUUAUUACAGCUGUCUAAC
...............(((((((...((((....(((..(((((...))).))..)))..))))))))))------------)(((.((((((.(((....)))))))))))).. ( -27.80)
>DroSec_CAF1 19209 102 + 1
UUCGUUGAUAUUUUUGUACCAGGUAUUCUUAUUUUUUGGGCAGGAUCUGAUCUGGAACUAGAACUGGUA------------CUGGUACAGCUAGUAUUAUUACAGCUGUCUAAC
...............(((((((...((((....(((..(((((...))).))..)))..))))))))))------------)(((.((((((.(((....)))))))))))).. ( -28.10)
>DroSim_CAF1 20 102 + 1
UUCGUUGAUAUUUUUGUACCAGGUAUUAUUAUUUUUUGGGCAGGAUCUGAUUUGGAACUAGAACUGGUA------------CUGGUACAGCUAGUGUUAUUACAGCUGUCUAAC
...............((((((((((....))).(((..(((((...))).))..)))......))))))------------)(((.((((((.(((....)))))))))))).. ( -23.80)
>DroEre_CAF1 19267 102 + 1
UUCGUCGAUAUUUUCGUACCAGGUAUUCUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUGGAACUGGUA------------CUGGUACAGCUAGUGUUAUUACAGCUGUCUAUA
...............(((((((...((((....(((..(((((...))).))..)))..))))))))))------------)(((.((((((.(((....)))))))))))).. ( -27.90)
>DroYak_CAF1 19753 114 + 1
UUCGUCGAUAUUUUCGUACCAGGUAGACUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUGGAACUGGUACUGGUACUGGUACUGGUACAGCUAGUGUUAUUACAGCUGUCUAUC
.....(((.....)))..(((((((((((((((....))).))).))).)))))).((..(.((..(((....)))..)).)..))((((((.(((....)))))))))..... ( -32.80)
>consensus
UUCGUCGAUAUUUUUGUACCAGGUAUUCUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUAGAACUGGUA____________CUGGUACAGCUAGUGUUAUUACAGCUGUCUAAC
......(((......(((((((............((..(((((...))).))..))((((....)))).............)))))))((((.(((....)))))))))).... (-23.04 = -22.48 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:13 2006