Locus 8286

Sequence ID X_DroMel_CAF1
Location 20,614,152 – 20,614,254
Length 102
Max. P 0.995854
window13609

overview

Window 9

Location 20,614,152 – 20,614,254
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.94
Mean single sequence MFE -30.15
Consensus MFE -24.75
Energy contribution -25.07
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -3.12
Structure conservation index 0.82
SVM decision value 2.62
SVM RNA-class probability 0.995854
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20614152 102 + 22224390
CGUGAU----UUCGAU--------------UUCGGGAUAUCGCUCUUAAGUCGAUUAGUCGCUGAUUCGUUAAUCAGCUUAUUGCUUAUCGGUUAUCAUUAAUCGAUGAAUUGAUUUGGU
.(((((----..((..--------------..))..)..))))..(((((((((((....(((((((....)))))))........(((((((((....)))))))))))))))))))). ( -30.00)
>DroSec_CAF1 18777 101 + 1
CGUGAU----UUCGAC--------------UUAGGGGUAUCGCU-UUAAAUCGAUUAGUCGCUGAUUCGUUAAUCAGCUUAUUGCUUAUCGGUUAUCAUUAAUCGAUGAAUUGAUUUGGU
.(((((----.((...--------------.....)).))))).-(((((((((((....(((((((....)))))))........(((((((((....)))))))))))))))))))). ( -28.40)
>DroEre_CAF1 18838 100 + 1
UGUGAU----UUCGAU--------------UUCGGGGUAUCGCUCUUAAAUCGAUUAGUCGCUGAUUCGUUAAUCGGCUUAUUGCUUAUCGGUUAUCAUUAAUCGAUGAAUUGAUUUG--
...(((----((((((--------------((.((((.....)))).)))))))..))))(((((((....))))))).......((((((((((....)))))))))).........-- ( -29.40)
>DroYak_CAF1 19297 118 + 1
UGAGAUCGGUUUCGAUUUCGAUAUCGCUCUUUCGGGGUAUCGCUCUUAAAUCGAUUAUUCGCUGAUUCGAUUAUCGGCUUAUUGCUUAUAGGUUAUCAUUAAUCGAUGAAUUGAUUUG--
.(((((((....)))))))((((((.(......).)))))).....((((((((((..((((((((......))))))............(((((....)))))))..))))))))))-- ( -32.80)
>consensus
CGUGAU____UUCGAU______________UUCGGGGUAUCGCUCUUAAAUCGAUUAGUCGCUGAUUCGUUAAUCAGCUUAUUGCUUAUCGGUUAUCAUUAAUCGAUGAAUUGAUUUG__
.(((((....(((((................)))))..)))))...((((((((((....((((((......))))))........(((((((((....))))))))))))))))))).. (-24.75 = -25.07 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:12 2006