| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,610,468 – 20,610,565 |
| Length | 97 |
| Max. P | 0.659643 |
| Location | 20,610,468 – 20,610,565 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 88.54 |
| Mean single sequence MFE | -18.23 |
| Consensus MFE | -17.37 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20610468 97 - 22224390 ACUUUUCUCCACUUCUCUAU--------UUCUCUAU----CUCACUCAAAAAUGCUAAUUUCAAUGUUUUUGUGUGUGUACGUGUGCUGCGUGCGCUUGUGUAUGUACA ....................--------........----..(((.(((((((............))))))).)))((((((((..(.((....))..)..)))))))) ( -19.80) >DroSec_CAF1 15081 105 - 1 ACUUUUCUCCACUUCUAUAUUUCUCUCUUUCUCUAU----CUCACUCAAAAAUGCUAAUUUCAAUGUUUUUGUGUGUGUACGUGUGCUGCGUGCGCUUGUGUAUCUACA .........(((........................----...((.(((((((............))))))).))((((((((.....))))))))..)))........ ( -16.70) >DroEre_CAF1 15151 109 - 1 ACUUAUCUCCACUUCUCCAUCUCUCUCUUUCUCUAUCUGUCUCACUCAAAAAUGCUAAUUUCAAUGUUUUUGUGUGUGUGCGUGUGCUGCGUGCGCUUGUGUGUGUACA ..........................................(((.(((((((............))))))).)))((((((..(((.((....))..)))..)))))) ( -18.20) >consensus ACUUUUCUCCACUUCUCUAU_UCUCUCUUUCUCUAU____CUCACUCAAAAAUGCUAAUUUCAAUGUUUUUGUGUGUGUACGUGUGCUGCGUGCGCUUGUGUAUGUACA ..........................................(((.(((((((............))))))).)))((((((((..(.((....))..)..)))))))) (-17.37 = -17.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:11 2006