| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,608,902 – 20,609,004 |
| Length | 102 |
| Max. P | 0.534808 |
| Location | 20,608,902 – 20,609,004 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 86.26 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -13.53 |
| Energy contribution | -14.84 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20608902 102 + 22224390 UUGGUCCUGGGAAA-AUUGAGCUGAAAAAAUCAACAGAGAACUGAAAGUAUAAA-AUGGCUAGAAAUGUGAAAACUAACAACAGGCUUUUUUU-UUCAGGGGUGG-- ..(.(((((..(((-(..(((((.......((..(((....)))..(((.....-...))).))...((....))........))))).))))-..))))).)..-- ( -20.50) >DroSec_CAF1 13537 95 + 1 UUGGCCCUGGGAAA-AUUGAGCUGAG-AAAUCAACAGAGAACUGAAAUAAUAAA-AUUGCUAGAAAUGUGAAAACUAACAACAGGCUUU---U-UUCAGGGG----- ....(((((..(((-((((((((((.-...))).(((....)))..........-...)))......((....))......)))..)))---)-..))))).----- ( -21.50) >DroEre_CAF1 13556 100 + 1 UUGGCCCUGGGAAAAAUUCAGCAGAG-AAAUCAACAGAGAACUGAAAGAAUAAAAAUGGUUAGAAAUGUGAAAACUAACAACGGGCUUUU----UUCAGGGCUGG-- (..((((((..((((((((....((.-...))..(((....)))...)))).......(((((...........))))).......))))----..))))))..)-- ( -27.20) >DroYak_CAF1 13986 106 + 1 UUGGCCAUGGGAAACAUUGAGCAGAG-AAAUCAACAGAGAACUGAAAGAAUAAAAAUGGUUAGAAAUGUGAUAACUAACAACAGGCUUUUUUUUUUGAGGGCUGGGG (..(((...(....)........((.-...))..(((((((..(((((........((((((.........))))))........))))))))))))..)))..).. ( -19.89) >consensus UUGGCCCUGGGAAA_AUUGAGCAGAG_AAAUCAACAGAGAACUGAAAGAAUAAA_AUGGCUAGAAAUGUGAAAACUAACAACAGGCUUUU__U_UUCAGGGCUGG__ ..(((((((((.......((((............(((....)))......................(((........)))....))))......))))))))).... (-13.53 = -14.84 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:10 2006