Locus 8283

Sequence ID X_DroMel_CAF1
Location 20,606,993 – 20,607,084
Length 91
Max. P 0.987465
window13605 window13606

overview

Window 5

Location 20,606,993 – 20,607,084
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 97.80
Mean single sequence MFE -17.33
Consensus MFE -17.55
Energy contribution -17.33
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.29
Structure conservation index 1.01
SVM decision value 1.66
SVM RNA-class probability 0.970595
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20606993 91 + 22224390
CUUUUUGUUAAUUGCUUAACAUUUUGUUUGGCAUUAAGAUUUUGCAAUACUCAUUGUAUUUUUGCUGUUGUAGUUUUGUGGUGAUUUUAGU
.............(((.(((.....))).)))((((((((((..(((.(((((..(((....)))...)).))).)))..).))))))))) ( -17.60)
>DroSec_CAF1 11602 91 + 1
CUUUUUGUUAAUUGCUUAACAUAUUGUUUGGCAUUAAGAUUUUGCAAUACUCAUUGUAUUUUUGCUGUUGUAGUUUUGUGGUGAUUUUGGU
.............(((.(((.....))).)))((((((((((..(((.(((((..(((....)))...)).))).)))..).))))))))) ( -17.20)
>DroEre_CAF1 11674 91 + 1
CUUUUUGUUAAUUGCUUAACAUUUUGUUUGGCAUUAAGAUUUUGCAAUACUCAUUGUAUAUUUGCUGUUGUAGUUUUGUGGUGAUUUUGGU
.............(((.(((.....))).)))((((((((((..(((.(((((..(((....)))...)).))).)))..).))))))))) ( -17.20)
>consensus
CUUUUUGUUAAUUGCUUAACAUUUUGUUUGGCAUUAAGAUUUUGCAAUACUCAUUGUAUUUUUGCUGUUGUAGUUUUGUGGUGAUUUUGGU
.............(((.(((.....))).)))((((((((((..(((.(((((..(((....)))...)).))).)))..).))))))))) (-17.55 = -17.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 20,606,993 – 20,607,084
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 97.80
Mean single sequence MFE -8.70
Consensus MFE -8.70
Energy contribution -8.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.74
Structure conservation index 1.00
SVM decision value 2.08
SVM RNA-class probability 0.987465
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20606993 91 - 22224390
ACUAAAAUCACCACAAAACUACAACAGCAAAAAUACAAUGAGUAUUGCAAAAUCUUAAUGCCAAACAAAAUGUUAAGCAAUUAACAAAAAG
..........................(((...((((.....)))))))......................((((((....))))))..... (  -8.70)
>DroSec_CAF1 11602 91 - 1
ACCAAAAUCACCACAAAACUACAACAGCAAAAAUACAAUGAGUAUUGCAAAAUCUUAAUGCCAAACAAUAUGUUAAGCAAUUAACAAAAAG
..........................(((...((((.....)))))))......................((((((....))))))..... (  -8.70)
>DroEre_CAF1 11674 91 - 1
ACCAAAAUCACCACAAAACUACAACAGCAAAUAUACAAUGAGUAUUGCAAAAUCUUAAUGCCAAACAAAAUGUUAAGCAAUUAACAAAAAG
..........................(((...((((.....)))))))......................((((((....))))))..... (  -8.70)
>consensus
ACCAAAAUCACCACAAAACUACAACAGCAAAAAUACAAUGAGUAUUGCAAAAUCUUAAUGCCAAACAAAAUGUUAAGCAAUUAACAAAAAG
..........................(((...((((.....)))))))......................((((((....))))))..... ( -8.70 =  -8.70 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:09 2006