Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,312,622 – 2,312,721 |
Length | 99 |
Max. P | 0.999494 |
Location | 2,312,622 – 2,312,721 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.75 |
Mean single sequence MFE | -35.24 |
Consensus MFE | -32.16 |
Energy contribution | -31.80 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -2.33 |
Structure conservation index | 0.91 |
SVM decision value | 3.65 |
SVM RNA-class probability | 0.999494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2312622 99 + 22224390 AAGCUGCACGCCCACCAACUAAAGUUUCGAGGAUCGAGAGAAAAUGGGGAUGCGAUCAUAUUUUGUAUUCUUCUCUCUAAUUGCGUGGGCGCCGCGUUC .....((.((((((((((..........(.....)((((((.....(((((((((.......)))))))))))))))...))).)))))))..)).... ( -32.10) >DroSec_CAF1 10611 99 + 1 AAGCUGCACGCCCACCAACUAAAGUUUCGAGGAUCGAGGGAGAAUGGGGAUGCGAUCAUAUUUUGUAUUCUUCUCUCUAAUUGCGUGGGCGCCGCGGUC ..(((((.((((((((((........(((.....)))((((((...(((((((((.......)))))))))))))))...))).)))))))..))))). ( -39.40) >DroSim_CAF1 11386 99 + 1 AUGCUGCACGCCCACCAACUAAAGUUUCGAGGAUCGAGGGAACAUGGGGAUGCGAUCAUAUUUUGUAUUCUUCUCUCUAAUUGCGUGGGCGCCGCGGUC ..(((((.((((((((((..........(.....)((((((.....(((((((((.......)))))))))))))))...))).)))))))..))))). ( -35.30) >DroEre_CAF1 11951 99 + 1 AAGCUGCACGCCCACUAACUAAAGUUUCGAGGACCUGGAGAAAAUGGGGAUGCGAUCAUAUUUUGUAUUCUUCUCUCUAAUUGCGUGGGCGCCGCGGUC ..(((((.(((((((........(((.....))).((((((....((((((((((.......)))))))))).)))))).....)))))))..))))). ( -34.30) >DroYak_CAF1 11640 99 + 1 AAGCUGCACGCCCACUAACUAAAGUUUCGAGGACCGGGGCAAAAUGGGGAUGCGAUUAUAUUUUGUAUUCUUCUCUCUAAUUGCGUGGGCGCCGCGGUC ..(((((.(((((((........((..((.....))..)).....((((((((((.......))))))))))............)))))))..))))). ( -35.10) >consensus AAGCUGCACGCCCACCAACUAAAGUUUCGAGGAUCGAGGGAAAAUGGGGAUGCGAUCAUAUUUUGUAUUCUUCUCUCUAAUUGCGUGGGCGCCGCGGUC ..(((((.((((((((((.....(((.....))).((((((.....(((((((((.......)))))))))))))))...))).)))))))..))))). (-32.16 = -31.80 + -0.36)
Location | 2,312,622 – 2,312,721 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.75 |
Mean single sequence MFE | -29.23 |
Consensus MFE | -24.75 |
Energy contribution | -25.31 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.43 |
Structure conservation index | 0.85 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2312622 99 - 22224390 GAACGCGGCGCCCACGCAAUUAGAGAGAAGAAUACAAAAUAUGAUCGCAUCCCCAUUUUCUCUCGAUCCUCGAAACUUUAGUUGGUGGGCGUGCAGCUU ....(((.(((((((.(((((((((((((((........................)))))))(((.....)))...))))))))))))))))))..... ( -31.36) >DroSec_CAF1 10611 99 - 1 GACCGCGGCGCCCACGCAAUUAGAGAGAAGAAUACAAAAUAUGAUCGCAUCCCCAUUCUCCCUCGAUCCUCGAAACUUUAGUUGGUGGGCGUGCAGCUU ....(((.(((((((.(((((((((...(((((.......(((....)))....)))))...(((.....)))..)))))))))))))))))))..... ( -30.50) >DroSim_CAF1 11386 99 - 1 GACCGCGGCGCCCACGCAAUUAGAGAGAAGAAUACAAAAUAUGAUCGCAUCCCCAUGUUCCCUCGAUCCUCGAAACUUUAGUUGGUGGGCGUGCAGCAU ....((.((((((((.(((((((((............((((((..........))))))...(((.....)))..)))))))))))))))))...)).. ( -32.20) >DroEre_CAF1 11951 99 - 1 GACCGCGGCGCCCACGCAAUUAGAGAGAAGAAUACAAAAUAUGAUCGCAUCCCCAUUUUCUCCAGGUCCUCGAAACUUUAGUUAGUGGGCGUGCAGCUU ....(((.(((((((..((((((((.((.((.........(((..........)))..........)).))....)))))))).))))))))))..... ( -25.41) >DroYak_CAF1 11640 99 - 1 GACCGCGGCGCCCACGCAAUUAGAGAGAAGAAUACAAAAUAUAAUCGCAUCCCCAUUUUGCCCCGGUCCUCGAAACUUUAGUUAGUGGGCGUGCAGCUU ....(((.(((((((..((((((((.....................(((.........)))..((.....))...)))))))).))))))))))..... ( -26.70) >consensus GACCGCGGCGCCCACGCAAUUAGAGAGAAGAAUACAAAAUAUGAUCGCAUCCCCAUUUUCCCUCGAUCCUCGAAACUUUAGUUGGUGGGCGUGCAGCUU ....(((.(((((((.(((((((((....(((((.....)))(((((................))))).))....)))))))))))))))))))..... (-24.75 = -25.31 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:48 2006