Locus 8279

Sequence ID X_DroMel_CAF1
Location 20,586,869 – 20,586,963
Length 94
Max. P 0.804204
window13596

overview

Window 6

Location 20,586,869 – 20,586,963
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 76.80
Mean single sequence MFE -24.25
Consensus MFE -15.16
Energy contribution -14.50
Covariance contribution -0.66
Combinations/Pair 1.32
Mean z-score -1.59
Structure conservation index 0.63
SVM decision value 0.63
SVM RNA-class probability 0.804204
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20586869 94 - 22224390
CAUCCC------CACCAAUCUCUGCUCUUUAUUC---GCUUUUUGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA
.....(------((((..((((.((.........---))((((..(((.((.((((............)))))).)))..))))....)))).)))))..... ( -23.20)
>DroVir_CAF1 205090 89 - 1
---AUU------UACUUAUUUUUUUUUUGUGU-----UUUUUUUGCAGGCAAUCUUAUUUUACACACCAAGAUGGCUGUGGAAGUCUUGGGAGGGUGGCAAAA
---...------....................-----...((((((..((..(((((.(((.((((((.....)).)))).)))...)))))..)).)))))) ( -17.00)
>DroPse_CAF1 190495 97 - 1
UAUGCUUUAUAUCAUCUGUGUGUGCUCUCUAUU------UUUCCGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA
..((((.(((((.....))))).(((((((...------(((((((((.((.((((............)))))).))))))))).....)))))))))))... ( -29.20)
>DroGri_CAF1 184934 97 - 1
CACACA------CACUCAUUUUGUCUAUGUAUUUAUGUUUCUUUGCAGGCAAUCUUAUUUUACACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA
....((------(.(((...((((((..(((............)))))))))..............(((((((..(....)..)))))))))).)))...... ( -21.50)
>DroWil_CAF1 191262 91 - 1
UAUAUA------UAUCACUCUCU---UUUUUUUU---GUCUUUUGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAAA
......------..((((((((.---......((---((((.....))))))..............(((((((..(....)..)))))))))))))))..... ( -24.90)
>DroPer_CAF1 189913 97 - 1
UAUGCUUUAUAUCAUCUGUGGGUGCUCUCUAUU------UUUCCGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA
..............(((...(.((((((((...------(((((((((.((.((((............)))))).))))))))).....)))))))).).))) ( -29.70)
>consensus
UAUACU______CACCUAUCUCUGCUCUCUAUU_____UUUUUUGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA
............(((((......................(((((((((.((.((((............)))))).)))))))))((....)))))))...... (-15.16 = -14.50 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:01 2006