Locus 8276

Sequence ID X_DroMel_CAF1
Location 20,583,874 – 20,583,994
Length 120
Max. P 0.543808
window13590

overview

Window 0

Location 20,583,874 – 20,583,994
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.22
Mean single sequence MFE -19.03
Consensus MFE -16.74
Energy contribution -17.60
Covariance contribution 0.86
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.88
SVM decision value 0.02
SVM RNA-class probability 0.543808
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20583874 120 + 22224390
AAUAACCACCCUGUAUAUUAGCGUUAAUAAUGUGAGAAACGUUAAUAAUAUAAACCAAAACCAAAGGAAAAUGUAAAUCUUCUCAUUAACAACGUUUAAUGGUAAAAUGCAAAUGGCGUC
.....(((...(((((.(((.((((((....((((((((((((..........................))))).....))))))).........)))))).))).)))))..))).... ( -16.59)
>DroVir_CAF1 202999 120 + 1
AAUAACCACCCUGUAUAUUAGCGUUAAUAAUGUGAGUAACGUUAAUAAUAUAAACCAAAACCAAAGGAAAAUGUAAAUUUUCUCAUUAACAACAUUUAAUGGUAAAAUGCAAAUGGCGUC
.....(((...(((((.(((.((((((((((((.....)))))).....................(((((((....)))))))............)))))).))).)))))..))).... ( -20.00)
>DroPse_CAF1 187752 120 + 1
AAUAACCACCCUGUAUAUUAGCGUUAACAUCGUGAGAAACGUUAAUAAGAUAAACCAAAACCAAAGGAAAAUGUAAAUCUUCUCGUUAACAACAUUUAAUGGUAAAAUGCAAAUGGCGUC
.....(((...(((((.(((.((((((..((....))...(((((((((((..((.....((...)).....))..)))))...)))))).....)))))).))).)))))..))).... ( -20.40)
>DroGri_CAF1 182883 120 + 1
AAUAACCACCCUGUAUAUUAGCGUUAACAAUGUGAGUAACGUUAAUAAUAUAAACCAAAACCAAAGGAAAAUGUAAAUUUUCUCAUUAACAACAUUUAAUGGUAAAAUGCAAAUGGCGUC
.....(((...(((((((((((((((.(.......))))))))))))............(((...(((((((....))))))).(((((......))))))))....))))..))).... ( -19.70)
>DroWil_CAF1 188504 120 + 1
AAUAACCACCCUGUAUAUUAGCGUUAAUAAUGUGAGAAACGUUAAUAAUAUGAACCAAAACCAAAGAAAAAUGUAAAUUUUCUCAUUAACAACAUUUAAUGGUAAAAUGCAAAUGGCGUC
.....(((...(((((.(((.((((((((((((.....))))))....................((((((.......))))))............)))))).))).)))))..))).... ( -17.50)
>DroAna_CAF1 160665 120 + 1
AAUAACCACCCUGUAUAUUAGCGUUAAUAAUGUGAGAAACGUUAAUAAGAUGAACCAAAACCAAAGGAAAAUGUAAAUUUUCUCAUUAACAACGUUUAAUGGUAAAAUGCAAAUGGCGUC
.....(((...(((((.(((.((((((((((((.....)))))).....................(((((((....)))))))............)))))).))).)))))..))).... ( -20.00)
>consensus
AAUAACCACCCUGUAUAUUAGCGUUAAUAAUGUGAGAAACGUUAAUAAUAUAAACCAAAACCAAAGGAAAAUGUAAAUUUUCUCAUUAACAACAUUUAAUGGUAAAAUGCAAAUGGCGUC
.....(((...(((((.(((.((((((((((((.....)))))).....................(((((((....)))))))............)))))).))).)))))..))).... (-16.74 = -17.60 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:56 2006