Locus 8273

Sequence ID X_DroMel_CAF1
Location 20,581,402 – 20,581,502
Length 100
Max. P 0.943955
window13583

overview

Window 3

Location 20,581,402 – 20,581,502
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 96.60
Mean single sequence MFE -12.80
Consensus MFE -12.70
Energy contribution -12.22
Covariance contribution -0.48
Combinations/Pair 1.12
Mean z-score -1.36
Structure conservation index 0.99
SVM decision value 1.34
SVM RNA-class probability 0.943955
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20581402 100 - 22224390
AGGAGAGCAGCCAACAUUCGCAUUAUAAAGCAAUUAACUCCUCUAAUAAUAGAGCAUUCUCAACUCUAUCUCUCUCUACGAAAAAUACGCCUAGUACUCA
.((((((.((.........((........)).................((((((.........))))))))))))))........(((.....))).... ( -13.50)
>DroSec_CAF1 151204 100 - 1
AGGAGAGCAGCCAACAUUCGCAUCAUAAAACAAUUAACUCCUCUAAUAAUAGAGCAUACUCAACUCUGUGUCUCUCUACGAAAAAUACGCCUAGUACUCA
.((((((((((........))...................(((((....)))))..............)).))))))........(((.....))).... ( -13.50)
>DroSim_CAF1 165196 100 - 1
AGGAGAGCAGCCAACAUUCGCAUCAUAAAACAAUUAACUCCUCUAAUAAUAGAGCAUACUCAACUCUGUCUCUCUCUACGAAAAAUACGCCUAGUACUCA
.((((((((((........))...................(((((....)))))............)).))))))..........(((.....))).... ( -12.80)
>DroEre_CAF1 145347 100 - 1
AAGAGAGCAGCCAACAUUCGCAUCAUAAAACAAUUAACUCCACUAAUAAUAGAGCAUACUCAACUCUAUCUCUCUCUACGAAAAAUACGCCUAGUACUCA
.((((((..((........))...........................((((((.........))))))..))))))........(((.....))).... ( -12.10)
>DroYak_CAF1 148302 100 - 1
AAGAGAGCAGCCAACAUUCGCAUCAUAAAACAAUUAACUCCACUAAUAAUAGAGCAUACUCAACUCUAUCUCUCUCUACGAAAAAUACGCCUAGUACUCA
.((((((..((........))...........................((((((.........))))))..))))))........(((.....))).... ( -12.10)
>consensus
AGGAGAGCAGCCAACAUUCGCAUCAUAAAACAAUUAACUCCUCUAAUAAUAGAGCAUACUCAACUCUAUCUCUCUCUACGAAAAAUACGCCUAGUACUCA
.((((((..((........))...........................((((((.........))))))..))))))........(((.....))).... (-12.70 = -12.22 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:50 2006