Locus 8271

Sequence ID X_DroMel_CAF1
Location 20,573,738 – 20,573,858
Length 120
Max. P 0.693132
window13580

overview

Window 0

Location 20,573,738 – 20,573,858
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 87.78
Mean single sequence MFE -34.87
Consensus MFE -27.64
Energy contribution -28.53
Covariance contribution 0.89
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.79
SVM decision value 0.33
SVM RNA-class probability 0.693132
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20573738 120 + 22224390
AGGCUCCAGGAUUUCGGGUACUCCUUCAAUUCGUCUAUCUUCUCUCGGUCGGCGUAGUGCUCCAUUUGCCUGACAUGGAUUUGCGCUGCUUUCUUCACCGACUUCGGCACGAAUCCACCA
.((...((((.....(((((((.........((((.(((.......))).)))).)))))))......))))...((((((((.((((...((......))...)))).)))))))))). ( -33.80)
>DroSec_CAF1 143507 120 + 1
AGGCUUCAGGAUUCCAGCUUCUCCUUCGCUUCGUCAAUCUCCUCUAGGUUGGCGCAGUGCUUCCAUUGCCUGACAUGGAUUUCUGCUGCUUCGUUCACCGACUUCGGCACGAUUCCACUU
.(((..(((((.((((...((...........((((((((.....))))))))((((((....))))))..))..)))).)))))..)))((((...(((....))).))))........ ( -35.40)
>DroSim_CAF1 157759 120 + 1
AGGCUUCAGGAUUCCAGCUUCUCCUUCGCUUCGUCAAUCUCCUCUAGGUUGGCGCAGUGCUUCCAUUGCCUGACAUGGAUUUCUGCUGCUUCGUUCACCGACUUCGGCACGAUUCCACCU
.(((..(((((.((((...((...........((((((((.....))))))))((((((....))))))..))..)))).)))))..)))((((...(((....))).))))........ ( -35.40)
>consensus
AGGCUUCAGGAUUCCAGCUUCUCCUUCGCUUCGUCAAUCUCCUCUAGGUUGGCGCAGUGCUUCCAUUGCCUGACAUGGAUUUCUGCUGCUUCGUUCACCGACUUCGGCACGAUUCCACCU
((((...((((..........)))).((((.((((((((.......)))))))).))))........))))....((((.((.(((((..(((.....)))...))))).)).))))... (-27.64 = -28.53 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:47 2006