Locus 8270

Sequence ID X_DroMel_CAF1
Location 20,571,169 – 20,571,288
Length 119
Max. P 0.777587
window13579

overview

Window 9

Location 20,571,169 – 20,571,288
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 68.57
Mean single sequence MFE -32.76
Consensus MFE -10.72
Energy contribution -12.04
Covariance contribution 1.32
Combinations/Pair 1.40
Mean z-score -1.93
Structure conservation index 0.33
SVM decision value 0.55
SVM RNA-class probability 0.777587
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20571169 119 - 22224390
UUCUGCCUCGCAUUGGUGAAAGGCGCUUUUACGGUACUUUUUGGAACUAGAAGUUCUUUCUC-AUGAAAGCGCCACCUAUGAGGGCGCAGCUUAUAAUACUAAGGAGCCAUGGAUAUGAA
..(((((((.(((.(((....((((((((((.((........(((((.....)))))...))-.))))))))))))).))).))).)))).(((((...(((.(....).))).))))). ( -32.80)
>DroSec_CAF1 138794 119 - 1
AUCUUCCUCGCAUUGGUGAAUGGCGCUCUUACGGUACUCUUUGGAACUGAGAGUGCUUUUUC-AUGAAAGCGCCACCUAUGAGGGCGUAGUAUAUAAUACUAUGUAGACAUUGAAUUGAA
.....(((((....(((....((((((.(((.(((((((((.......))))))))).....-.))).)))))))))..)))))(((((((((...)))))))))............... ( -36.40)
>DroSim_CAF1 151387 106 - 1
-------------UGGUGAAUGGCGCUCUUACGGUACUCUUUGGAACUAAGAGUGCUUCAUC-GUGAAAGCGCCACCUAUGAGGGCGUAGUAAAUAAUACUAUGUAGACAUAGAAUUGAA
-------------.......(((((((.(((((((((((((.......)))))))).....)-)))).))))))).(((((...((((((((.....))))))))...)))))....... ( -39.60)
>DroEre_CAF1 137942 105 - 1
UUGGUC--AAC------GAAAU-------GGCGGUAAGCUGUGGUACUAAGGGUACUGGCCCAAAGAAAGCACCACCUAUGGGGGCGCAGUGUAGACUAAUAUAUAGAUAUGGGAAGAGA
((((((--.((------...((-------.((((....)))).))(((..((((....)))).......((.((.((....)))).))))))).)))))).................... ( -26.40)
>DroYak_CAF1 140747 119 - 1
UUGGGCUUAACAGUGGUGAAAGGAGCUUUUACGGUAAGCUUUGGUACUAUGGAUACUGGCCU-AAGAAAGCACCACCUAUGAGGGCACAGUGUAGAAUAAUAUGUAGAUAUGGCUAUAAA
(((((((.....((((((...(((((((.......)))))))..)))))).......)))))-))....((.((........))))....(((((....((((....))))..))))).. ( -28.60)
>consensus
UUCGGC_UAACA_UGGUGAAAGGCGCUCUUACGGUACUCUUUGGAACUAAGAGUACUUGCUC_AUGAAAGCGCCACCUAUGAGGGCGCAGUAUAUAAUACUAUGUAGACAUGGAAAUGAA
................................(((((((((.......)))))))))............(((((.(......))))))...........(((((....)))))....... (-10.72 = -12.04 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:46 2006