Locus 8269

Sequence ID	X_DroMel_CAF1
Location	20,565,242 – 20,565,356
Length	114
Max. P	0.534410

overview

Window 8

Location	20,565,242 – 20,565,356
Length	114
Sequences	3
Columns	114
Reading direction	forward
Mean pairwise identity	95.32
Mean single sequence MFE	-27.13
Consensus MFE	-24.15
Energy contribution	-24.37
Covariance contribution	0.22
Combinations/Pair	1.03
Mean z-score	-1.77
Structure conservation index	0.89
SVM decision value	0.00
SVM RNA-class probability	0.534410
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20565242 114 + 22224390
CAAAUGCAUUAUUUGCAUUAUAAGUUGUUCUAAGUGAUGUAAGUGCUUGAUAUCUAAAGUACUAGAUAUAAAAGCCAGCUACUCUGGGGAUAGCUGAAAUGCCUACCAAGCGAU
....(((((((((((((........)))...))))))))))..(((((((((((((......)))))))......((((((((....)).))))))..........)))))).. ( -29.60)
>DroSec_CAF1 132836 114 + 1
CAAAUGCGUUUUUUGCAUUAUAAGUUGUACUAAGUGAUAUAAGUGCUUGAUAUCUAAAGUACUAGAUAUAAAAGCCUGUAACUCUGGGGAUAGCUGAAAUGCCUAUCAAGCGAU
......(((((...(((((...((((((.((.((.(.((((.(.((((.(((((((......)))))))..))))))))).).)).)).))))))..))))).....))))).. ( -25.90)
>DroSim_CAF1 145395 114 + 1
CAAAUGCGUUUUUUGCAUUAUAAGUUGUACUAAGUGAUAUAAGUGCUUGAUAUCUAAAGUACUAGAUAUAAAAGCCUGUAACUCUGGGGAUAGCUGAAAUGCCUAUCAAGCGAU
......(((((...(((((...((((((.((.((.(.((((.(.((((.(((((((......)))))))..))))))))).).)).)).))))))..))))).....))))).. ( -25.90)
>consensus
CAAAUGCGUUUUUUGCAUUAUAAGUUGUACUAAGUGAUAUAAGUGCUUGAUAUCUAAAGUACUAGAUAUAAAAGCCUGUAACUCUGGGGAUAGCUGAAAUGCCUAUCAAGCGAU
....(((.......(((((...((((((.((.((.(.((((.(.((((.(((((((......)))))))..))))))))).).)).)).))))))..))))).......))).. (-24.15 = -24.37 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:45 2006