Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,555,516 – 20,555,620 |
Length | 104 |
Max. P | 0.861001 |
Location | 20,555,516 – 20,555,620 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -13.77 |
Consensus MFE | -12.32 |
Energy contribution | -12.77 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.08 |
Mean z-score | -1.72 |
Structure conservation index | 0.89 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20555516 104 + 22224390 ACGUGCAGUCUGAUUAAAAUAUUUGCCUGGAUGCCUUGUUACUACCACAUAUUUUACCAAUUUUUCCCUUCUUACGACUAUGAUACAUUAUAUUAUCAUUUUCC .(((.(((.(.(((......))).).))).)))..........................................((..((((((........))))))..)). ( -9.70) >DroSec_CAF1 123093 92 + 1 ACGUGCAGUCAGAUUAAAAUAUUUGACUGGACGCCUUGUUACUACCACAUAUUUGACCAAUAUUUCCUUUACUACUACUAUGAU------------CAUUUUCC .(((.(((((((((......))))))))).)))...................................................------------........ ( -15.80) >DroSim_CAF1 135865 104 + 1 ACGUGCAGUCAGAUUAAAAUAUUUGACUGGACGCCUUGUUACUACCACAUAUUUCACCAAUUUUUUCUUUACUACUACUAUGAUACAUUAUAUUCUCAUUAUCC .(((.(((((((((......))))))))).)))....................................................................... ( -15.80) >consensus ACGUGCAGUCAGAUUAAAAUAUUUGACUGGACGCCUUGUUACUACCACAUAUUUCACCAAUUUUUCCUUUACUACUACUAUGAUACAUUAUAUU_UCAUUUUCC .(((.(((((((((......))))))))).)))....................................................................... (-12.32 = -12.77 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:44 2006