Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,549,296 – 20,549,391 |
Length | 95 |
Max. P | 0.860951 |
Location | 20,549,296 – 20,549,391 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 84.77 |
Mean single sequence MFE | -23.38 |
Consensus MFE | -15.64 |
Energy contribution | -18.08 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.14 |
Mean z-score | -2.37 |
Structure conservation index | 0.67 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20549296 95 + 22224390 -----GUUUCUCAUAAGUGAGUGCAACUCUCGUCGAAAAUUGAGUAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA -----....((((....))))(((.(((((.(((.(......(....)......).)))))))).((((((....))))))...........)))..... ( -20.20) >DroSec_CAF1 117005 95 + 1 -----GUUUCCCAUGAGUCAGUGCAACUCUCGUCAAAAAUUGGGGAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA -----...............((((.(((((.(((.......(((.....)))....)))))))).((((((....))))))...........)))).... ( -23.70) >DroSim_CAF1 129690 95 + 1 -----GUGUCUCAUGAGUCAGUGCAACUCUCGUCAAAAAUUGGGGAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA -----.((.((....)).))((((.(((((.(((.......(((.....)))....)))))))).((((((....))))))...........)))).... ( -24.70) >DroEre_CAF1 116061 100 + 1 ACCAUGUUUGACUUGAAGUAGUGCAACUCCUGUCAAACAUUUCAGCAUACCUUGUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA ...(((((((((..((.((......))))..)))))))))....((.(((.(((....))).)))((((((....))))))...........))...... ( -23.30) >DroYak_CAF1 118520 100 + 1 AGCUUGCUUGGUUUCAAGUAGUGCAACUCUCGCCAAACAUUGUGGGUUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA ....((((((....))))))((((.(((((..(((........((....))...)))..))))).((((((....))))))...........)))).... ( -25.00) >consensus _____GUUUCUCAUGAGUCAGUGCAACUCUCGUCAAAAAUUGGGGAAUACCUUCUGGACAGAGUAUCACUUGAAAGAGUGACAUAAAAAUAAGCAUAAAA ....................((((.(((((.(((.......((((.....))))..)))))))).((((((....))))))...........)))).... (-15.64 = -18.08 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:43 2006