Locus 8266

Sequence ID X_DroMel_CAF1
Location 20,547,501 – 20,547,604
Length 103
Max. P 0.892108
window13575

overview

Window 5

Location 20,547,501 – 20,547,604
Length 103
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 77.71
Mean single sequence MFE -19.42
Consensus MFE -11.40
Energy contribution -11.40
Covariance contribution 0.00
Combinations/Pair 1.31
Mean z-score -2.03
Structure conservation index 0.59
SVM decision value 0.97
SVM RNA-class probability 0.892108
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20547501 103 - 22224390
CCGCUUAAGUAUGCUACACACAUUUUUUUGGUAACCCUUACCAAGGCCCAAAGCACCCCU-UUACUUUACCCCUCCGCCGCCGAUGUGUAUGUGGCAC----ACAAAC
........((.(((((((((((((...((((((.....))))))(((.....((......-...............)).))))))))))..)))))).----)).... ( -23.40)
>DroVir_CAF1 165459 95 - 1
CCACCCGAGCAUGCUUUGCCCAUUUUUUUGGUAACCCUUCUCCAAGCUGUUGGUGCUGUUGUUGCU-------UUUGUUGCUGC------UGUCGCACACUCACAAAC
......(((..(((...(((((....(((((..........)))))....))).)).((.((.((.-------...)).)).))------....)))..)))...... ( -18.00)
>DroSec_CAF1 115121 94 - 1
CCGCUUAAGUAUGCUACACACAUUUUUUUGGUAACCCUUACCAAGGCCCAAAGCACCCCU-UUACUUUACCCCUCCG---CCGA------UGUGGCAC----ACAAAC
........((.((((((((........((((((.....))))))(((.............-...............)---))).------))))))).----)).... ( -17.99)
>DroSim_CAF1 127800 97 - 1
CCGCUUAAGUAUGCUACACACAUUUUUUUGGUAACCCUUACCAAGGCCCAAAGCACCCCU-UUACUUUACCCCUCCGCCGCCGA------UGUGGCAC----ACAAAC
........((.((((((((........((((((.....))))))(((.....((......-...............)).)))).------))))))).----)).... ( -18.30)
>DroEre_CAF1 114219 97 - 1
CCGCUUAAGUAUGCUACACACAUUUUUUUGGUAACCCCUACCAAGGCCCAAAGCACCCCU-UUCCUUCACCCCUCCACCGCUGA------UGUGGCAC----ACAAGC
..((((..((.((((((((((.....(((((((.....)))))))((.....))......-..................).)).------))))))).----)))))) ( -19.40)
>consensus
CCGCUUAAGUAUGCUACACACAUUUUUUUGGUAACCCUUACCAAGGCCCAAAGCACCCCU_UUACUUUACCCCUCCGCCGCCGA______UGUGGCAC____ACAAAC
...........(((((((........(((((((.....)))))))((.....))....................................)))))))........... (-11.40 = -11.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:42 2006