Locus 8265

Sequence ID X_DroMel_CAF1
Location 20,545,882 – 20,545,982
Length 100
Max. P 0.621955
window13574

overview

Window 4

Location 20,545,882 – 20,545,982
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -31.42
Consensus MFE -28.22
Energy contribution -27.94
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.18
Structure conservation index 0.90
SVM decision value 0.18
SVM RNA-class probability 0.621955
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20545882 100 + 22224390
ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCACUUAGCUCCUCGUCAGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC
...(((((((.....)).)))))..........((((..((..........))..((((...(.((((((.((....)))))))))))))....)))).. ( -27.40)
>DroSec_CAF1 113475 100 + 1
ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCGCUAAGCUCCUCGUCGGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC
...(((((((.....)).)))))..........((((..((.....))........((.((((.((((((.((....))))))))))))))...)))).. ( -32.20)
>DroSim_CAF1 126156 100 + 1
ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCGCUAAGCUCCUCGUCGGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC
...(((((((.....)).)))))..........((((..((.....))........((.((((.((((((.((....))))))))))))))...)))).. ( -32.20)
>DroEre_CAF1 112509 100 + 1
ACUUGCCAUCAUCCUGGUUGGCACUCAUCCGCAGUCCCCGCACUUCGCUCAGCUCCUCUUCGGUGAGAUCCUCCAUGGAGAUUUCCCGAGAUUGGGGCAC
...(((((((.....)).))))).......((.......))..........(((((..(((((.((((((.((....)))))))))))))...))))).. ( -31.30)
>DroYak_CAF1 115599 100 + 1
ACUUGCCAUCAUCAUGACUGGCACUCAUCCGCAGCGCACGCACUUCGCUGAGCUCCUCGUCGGUGAGGUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC
...(((((((.....)).)))))........(((((.........))))).((((.((.((((.((((((.((....))))))))))))))...)))).. ( -34.00)
>consensus
ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCGCUAAGCUCCUCGUCGGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC
...(((((((.....)).))))).......((.......))..........((((.((.((((.((((((.((....))))))))))))))...)))).. (-28.22 = -27.94 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:42 2006