Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,542,290 – 20,542,382 |
Length | 92 |
Max. P | 0.893729 |
Location | 20,542,290 – 20,542,382 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 78.23 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -18.25 |
Energy contribution | -19.25 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.15 |
Mean z-score | -1.85 |
Structure conservation index | 0.65 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20542290 92 + 22224390 CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--CGCCAUCCCCGCAAAGCCCAAAAAAGCAAAGG---GCCA .........((.(((((..(((((((.......)))))))(((((.....))))).--))))).)).......((((...........))---)).. ( -30.00) >DroPse_CAF1 137702 73 + 1 CAGAAAAAUGGUUGGCAAUGUCGUUGGCAACCACAGUGGCAGCGGC---AGCGGCA---GCCACCCCCGAAAAAA--------UGAA---------- ........((((((.(..((((((((.((.......)).)))))))---)..).))---))))............--------....---------- ( -24.20) >DroSim_CAF1 122270 91 + 1 CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--GGCCAUCCCCGCAAAGCCCAA-AAAGCAAAGG---GCCA ........((((((.((((...)))).))))))..((((((((((.....))))).--.))))).........((((..-........))---)).. ( -30.00) >DroEre_CAF1 108758 92 + 1 CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--GGCCAUCCCCGAAAAGCCCAAAAAAGCAAAGG---GCCA ........((((((.((((...)))).))))))..((((((((((.....))))).--.))))).........((((...........))---)).. ( -29.90) >DroWil_CAF1 143516 88 + 1 CAGAAAAAUGGUUGGCAAUGUCGUUGGCAACCACAGCGGCAGC---AUCGUCAGCAACGGCAACGUCAGCAACCCCCAGAAAAAUAAAGG---A--- ........(((.((((..((((((((.......))))))))..---...))))((.(((....)))..)).....)))............---.--- ( -22.10) >DroYak_CAF1 111861 95 + 1 CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA--GGCCAUCCCCGAAAAGCCCAAAAAAGCAAAGGGCGGCCA ........((((((.((((...)))).)))))).......(((((.....))))).--((((.((...))...((((...........)))))))). ( -32.10) >consensus CAGAAAAAUGGUUGGCGAUGUCGUUGGCAACCACAGUGGCGCAGGCGUAUCCUGCA__GGCCAUCCCCGAAAAGCCCAAAAAAGCAAAGG___GCCA ........((((((.((((...)))).))))))..((((((((((.....)))))....)))))................................. (-18.25 = -19.25 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:40 2006