Locus 8262

Sequence ID X_DroMel_CAF1
Location 20,537,521 – 20,537,648
Length 127
Max. P 0.999916
window13568 window13569 window13570 window13571

overview

Window 8

Location 20,537,521 – 20,537,612
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 95.71
Mean single sequence MFE -27.42
Consensus MFE -24.92
Energy contribution -25.56
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -2.91
Structure conservation index 0.91
SVM decision value 4.31
SVM RNA-class probability 0.999867
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20537521 91 + 22224390
CAUCAAAUGGCAAACACGCUGGCGUUUUAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAUCAGCA
.................((((..((.(((((.(((......)))(((((((((((........)))))))))))..))))).))..)))). ( -28.60)
>DroSec_CAF1 105029 91 + 1
CAUCAAAUGGCAAACACGCUGUCGUUUUAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCA
.................(((((.((.(((((.(((......)))(((((((((((........)))))))))))..))))).)).))))). ( -29.40)
>DroSim_CAF1 114395 91 + 1
CAUCAAAUGGCAAACACGCUGGCGUUUUAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCA
.................((((..((.(((((.(((......)))(((((((((((........)))))))))))..))))).))..)))). ( -26.60)
>DroEre_CAF1 103917 91 + 1
CAUCAAAUGGCAAACACGCUUGCAUUUCAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCGCGGCAGCAGCAAAAAACUGACACUGCAGCA
.................(((.(((..(((((.(((......)))(((((((((((........)))))))))))..)))))...)))))). ( -27.70)
>DroYak_CAF1 106876 91 + 1
CAUCAAAUGGCAAACACGCUCGCGUUCUAGUAUUGAUUAUGCAGUUUGUUGCUGCGAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCA
.................(((.((......((((.....))))..(((((((((((........)))))))))))...........))))). ( -24.80)
>consensus
CAUCAAAUGGCAAACACGCUGGCGUUUUAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCA
.................((((..((.(((((.(((......)))(((((((((((........)))))))))))..))))).))..)))). (-24.92 = -25.56 +   0.64)

alignment

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secondary structure

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dotplot

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Window 9

Location 20,537,521 – 20,537,612
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 95.71
Mean single sequence MFE -27.74
Consensus MFE -26.98
Energy contribution -27.06
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -2.43
Structure conservation index 0.97
SVM decision value 4.54
SVM RNA-class probability 0.999916
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20537521 91 - 22224390
UGCUGAUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUAAAACGCCAGCGUGUUUGCCAUUUGAUG
......((((.((((((.(((((((...........))))))).))))))))))(((((.....((((((....)))))).....))))). ( -28.70)
>DroSec_CAF1 105029 91 - 1
UGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUAAAACGACAGCGUGUUUGCCAUUUGAUG
......((((.((((((.(((((((...........))))))).))))))))))(((((.....(((((......))))).....))))). ( -25.60)
>DroSim_CAF1 114395 91 - 1
UGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUAAAACGCCAGCGUGUUUGCCAUUUGAUG
......((((.((((((.(((((((...........))))))).))))))))))(((((.....((((((....)))))).....))))). ( -28.50)
>DroEre_CAF1 103917 91 - 1
UGCUGCAGUGUCAGUUUUUUGCUGCUGCCGCGAUUUGCAGCAACAAACUGCAUAAUCAAUACUGAAAUGCAAGCGUGUUUGCCAUUUGAUG
.(((((((((.((((((.(((((((...........))))))).)))))))))..(((....)))..))).)))................. ( -26.50)
>DroYak_CAF1 106876 91 - 1
UGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUCGCAGCAACAAACUGCAUAAUCAAUACUAGAACGCGAGCGUGUUUGCCAUUUGAUG
......((((.((((((.(((((((...........))))))).))))))))))(((((.....((((((....)))))).....))))). ( -29.40)
>consensus
UGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUAAAACGCCAGCGUGUUUGCCAUUUGAUG
......((((.((((((.(((((((...........))))))).))))))))))(((((.....((((((....)))))).....))))). (-26.98 = -27.06 +   0.08)

alignment

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secondary structure

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dotplot

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Window 0

Location 20,537,548 – 20,537,648
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 93.69
Mean single sequence MFE -28.52
Consensus MFE -24.60
Energy contribution -24.60
Covariance contribution -0.00
Combinations/Pair 1.14
Mean z-score -3.02
Structure conservation index 0.86
SVM decision value 3.83
SVM RNA-class probability 0.999647
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20537548 100 + 22224390
UAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAUCAGCAGCACCAACUGCACAACAGCAACACACGCCGAGAAAA
............((((((.....))))))..(((((((.((((.......))).)......((((......))))...............)))))))... ( -28.10)
>DroSec_CAF1 105056 100 + 1
UAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCAGCACCAACUACACAUCAGCCACACACGCCGAGAAAA
............((((((.....))))))..(((((((.((((.......))).)...((....))........................)))))))... ( -24.10)
>DroSim_CAF1 114422 100 + 1
UAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCAGCACCAACUGCACAUCAGCCACACACGCCGAGAAAA
............((((((.....))))))..(((((((.((((.......))).)......((((......))))...............)))))))... ( -28.10)
>DroEre_CAF1 103944 99 + 1
CAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCGCGGCAGCAGCAAAAAACUGACACUGCAGCAGCACCAACUGCACUUCAGCAGCACACGUCGCGAAA-
......(((...(((((((((((((((((....((....)).(((......)).)..))))))))))..)))))))..)))((.((....)).))....- ( -30.50)
>DroYak_CAF1 106903 99 + 1
UAGUAUUGAUUAUGCAGUUUGUUGCUGCGAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCAACACCAACUGCACAUCAGCCACACACGGCGAGAAA-
......((((..((((((((((((((((.....((((.............))))....)))))))))..))))))).))))(((......)))......- ( -31.82)
>consensus
UAGUAUUGAUUAUGCAGUUUGUUGCUGCAAAUCUCGGCAGCAGCAAAAAACUGACACAGCAGCAGCACCAACUGCACAUCAGCCACACACGCCGAGAAAA
............((((((.....))))))..(((((((.((((.......))).)......((((......))))...............)))))))... (-24.60 = -24.60 +  -0.00)

alignment

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secondary structure

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dotplot

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Window 1

Location 20,537,548 – 20,537,648
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 93.69
Mean single sequence MFE -34.14
Consensus MFE -28.18
Energy contribution -28.46
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -2.61
Structure conservation index 0.83
SVM decision value 2.57
SVM RNA-class probability 0.995387
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20537548 100 - 22224390
UUUUCUCGGCGUGUGUUGCUGUUGUGCAGUUGGUGCUGCUGAUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUA
............((((((..(((((((((((..((((((.(((.((.((((........)))).))..))).))))))...))))))))))))))))).. ( -36.50)
>DroSec_CAF1 105056 100 - 1
UUUUCUCGGCGUGUGUGGCUGAUGUGUAGUUGGUGCUGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUA
...((((((((.(((.((((((..((((((.......))))).)..))))))...)))...))))))))..(((((.......)))))............ ( -32.00)
>DroSim_CAF1 114422 100 - 1
UUUUCUCGGCGUGUGUGGCUGAUGUGCAGUUGGUGCUGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUA
...((((((((.(((.((((((..((((((.......))))).)..))))))...)))...))))))))..(((((.......)))))............ ( -34.00)
>DroEre_CAF1 103944 99 - 1
-UUUCGCGACGUGUGCUGCUGAAGUGCAGUUGGUGCUGCUGCAGUGUCAGUUUUUUGCUGCUGCCGCGAUUUGCAGCAACAAACUGCAUAAUCAAUACUG
-.((((((........))).)))((((((((..((((((....(((.((((........)))).))).....))))))...))))))))........... ( -32.70)
>DroYak_CAF1 106903 99 - 1
-UUUCUCGCCGUGUGUGGCUGAUGUGCAGUUGGUGUUGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUCGCAGCAACAAACUGCAUAAUCAAUACUA
-......((((....))))((((((((((((..(((((((((.(((.((((.....)))).))).(.....)))))))))))))))))).))))...... ( -35.50)
>consensus
UUUUCUCGGCGUGUGUGGCUGAUGUGCAGUUGGUGCUGCUGCUGUGUCAGUUUUUUGCUGCUGCCGAGAUUUGCAGCAACAAACUGCAUAAUCAAUACUA
............((((...((((((((((((..((((((.....((.((((........)))).))......))))))...)))))))).)))))))).. (-28.18 = -28.46 +   0.28)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:39 2006