| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,533,754 – 20,533,857 |
| Length | 103 |
| Max. P | 0.824082 |
| Location | 20,533,754 – 20,533,857 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 88.18 |
| Mean single sequence MFE | -28.92 |
| Consensus MFE | -23.16 |
| Energy contribution | -23.80 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20533754 103 + 22224390 GACACCAAAUGGCUGCGAUUUAAUUUCCACACUCGAGGGCUGGCCGGAGACAAGGUGGGCGGGGUGGGAAAGCAGGAAAGCAGGAAAGCAGGAAAGGCAGGAA----- ....((......((((..(((..(((((.(((((....(((.((((....)..))).))).))))))))))....))).))))....((.......)).))..----- ( -30.60) >DroSec_CAF1 101290 87 + 1 GACACCAAAUGGCUGCGAUUUAAUUUCCACACUCGAGGGCUGGCCGGAGACAAGGUGGGCGGGGUGGGAAAGC----------------AGGAAAGGCAGGAA----- ....((....))((((..(((..(((((.(((((....(((.((((....)..))).))).))))))))))..----------------..)))..))))...----- ( -28.00) >DroSim_CAF1 110646 95 + 1 GACACCAAAUGGCUGCGAUUUAAUUUCCACACUCGAGGGCUGGCCGAAGACAAGGUGGGUGGGGUGGGAAAGCAGGA--------AAGCAGGAAAGGCAGGAA----- ....((....))((((.......(((((.(((((....(((.(((........))).))).))))))))))((....--------..)).......))))...----- ( -26.90) >DroEre_CAF1 100128 96 + 1 GACACCAAAUGGCUGCGAUUUAAUUUCCACACUCGAGGGCUGGCCGGAGACAAGGUGGGCGGGGUGGGAAAGCAGGAA-------AAGCAGGAGCAGCAGGAA----- ....((.....(((((.......(((((.(((((....(((.((((....)..))).))).))))))))))((.....-------..))....))))).))..----- ( -32.10) >DroYak_CAF1 103028 101 + 1 GACACCAAAUGGCUGCGAUUUAAUUUCCACACUCGAGGGCAGGCCGGAGACAAGGUGGGCGGGGUGGGAAAGCGGGAA-------AAGCAGGAAAAGCUGGAAAAGGA ....(((..(..((((..(((..(((((.(((((....((..((((....)..)))..)).))))))))))....)))-------..))))....)..)))....... ( -27.00) >consensus GACACCAAAUGGCUGCGAUUUAAUUUCCACACUCGAGGGCUGGCCGGAGACAAGGUGGGCGGGGUGGGAAAGCAGGAA_______AAGCAGGAAAGGCAGGAA_____ ....((....))((((.......(((((.(((((....(((.(((........))).))).))))))))))((..............)).......))))........ (-23.16 = -23.80 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:36 2006