| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,531,886 – 20,531,979 |
| Length | 93 |
| Max. P | 0.931157 |
| Location | 20,531,886 – 20,531,979 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -26.83 |
| Consensus MFE | -18.89 |
| Energy contribution | -19.07 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20531886 93 - 22224390 AAACUAUCUAAGCCCCCACCGGCUGCCUUGCAUCUUCUUCUUUUUGCCUUGUUUGGGCAGAUAUGAAGACAAC--AAGGGGGCGUGGCUGCCACA ...........((((((....((......))....(((((..(((((((.....)))))))...)))))....--..))))))((((...)))). ( -35.80) >DroSec_CAF1 99491 73 - 1 AAACUAUCUA-----------------UCGCAUCUUCUUC---UUGCCUCAUUUGGGCAGAUAUCAAGACAAC--AAGGGGGCGUGGCUGCCACA ..........-----------------.....((((..((---(.((((.....)))))))....))))....--..((.(((...))).))... ( -14.00) >DroEre_CAF1 98356 88 - 1 AAACUAUCUAAGCCC----CGGCUUCCUUGCCUCUUCUUC---UUGCCUUCUUUGGGCAGAUAUUGAGACACCAAAAGGGGGCGUGGCUGUCACA ...........((((----((((......)))((((..((---(.((((.....)))))))....)))).........)))))(((.....))). ( -28.00) >DroYak_CAF1 101257 86 - 1 AAACUAUCUAAGCCC----CGGCUUCCUCGCCUCCGCUUC---UUGCCCUAUUUGGGCAGAUAUUAAGACAAC--AAGGGGGCGUGGCUGUCACA ...............----.(((..((.(((((((...((---(.((((.....)))))))............--..))))))).))..)))... ( -29.53) >consensus AAACUAUCUAAGCCC____CGGCUUCCUCGCAUCUUCUUC___UUGCCUUAUUUGGGCAGAUAUUAAGACAAC__AAGGGGGCGUGGCUGCCACA ..........((((......)))).....((((((((((....((((((.....)))))).....))))........))))))((((...)))). (-18.89 = -19.07 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:35 2006