Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,309,906 – 2,310,070 |
Length | 164 |
Max. P | 0.943040 |
Location | 2,309,906 – 2,310,013 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -30.44 |
Consensus MFE | -24.26 |
Energy contribution | -23.94 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -2.15 |
Structure conservation index | 0.80 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2309906 107 + 22224390 CAUUGUGGCCAAAAUUGCGAUGGCAA------UAUGUUGCUAGUUCCCAACAUGACGU--CCAUUGUUGCUCGUCUGGCAACAUGCCGCUUCUGUGUAUUACC-----AACUAUUACGAA (((.(((((....(((((....))))------)((((((((((....(((((((....--.)).))))).....)))))))))))))))....))).......-----............ ( -30.10) >DroSec_CAF1 7883 107 + 1 CAUUGUGGCCAAAAUUGCGCAGGCAA------UAUGUUGCUAGUUCCCAACAUGACGU--CCAUUGUUGCUCGUCUGGCAACAUGCCGCCGCUGUGUAUUACC-----AACUAUUACGAA (((.(((((....(((((....))))------)((((((((((....(((((((....--.)).))))).....))))))))))...))))).))).......-----............ ( -31.90) >DroSim_CAF1 8688 107 + 1 CAUUGUGGCCAAAAUUGCGCAGGCAA------UAUGUUGCUAGUUCCCAACAUGACGU--CCAUUGUUGCUCGUCUGGCAACAUGCCGCCGCUGUGUAUUACC-----AACUAUUACGAG (((.(((((....(((((....))))------)((((((((((....(((((((....--.)).))))).....))))))))))...))))).))).......-----............ ( -31.90) >DroEre_CAF1 9141 113 + 1 UUUUGUGGCUAAAAUGGCUUAGGCAUUUUACUUAUGUUGCUAGUUUCUAACAUGACGU--CUAUUGUUGUUCGUCUGGCAACAUGCCGCUGCCGUGUAUUACC-----AACUAUUACCCA .....(((.(((.(((((...((((.........(((((((((...(.((((..(((.--....))))))).).)))))))))))))...)))))...)))))-----)........... ( -29.80) >DroYak_CAF1 8791 116 + 1 UAUUGUGGCUUAAAU----AAGGCAUUUUACUUAUGUUGCUAGUUCCUAACAUGUUGUUUCCAUUGUUAUUUGGCUAGCAACAUGCCGCUGCUGUGUGUUACCAUUACAACUAUUACCCA ....(((((....((----(((........)))))((((((((((..(((((...((....)).)))))...))))))))))..))))).....((((.......))))........... ( -28.50) >consensus CAUUGUGGCCAAAAUUGCGAAGGCAA______UAUGUUGCUAGUUCCCAACAUGACGU__CCAUUGUUGCUCGUCUGGCAACAUGCCGCUGCUGUGUAUUACC_____AACUAUUACGAA ....(((((.......((....)).........((((((((((....(((((((.......)).))))).....)))))))))))))))............................... (-24.26 = -23.94 + -0.32)
Location | 2,309,978 – 2,310,070 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -28.23 |
Consensus MFE | -19.18 |
Energy contribution | -19.22 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.04 |
Structure conservation index | 0.68 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2309978 92 - 22224390 UAUGUG-------GCCAACACAAAUUGCAUGUUGUCAAUGGAGGCAAUCAAUGUUUGAUUGC--AGUUCGUAAUAGUU-----GGUAAUACACAGAAGCGGCAUGU ..((((-------.....))))....(((((((((..(((((.(((((((.....)))))))--..))))).....((-----(........)))..))))))))) ( -24.70) >DroSec_CAF1 7955 94 - 1 UAUGUG-------GUCAGCACAAAUUGCAUGUUGUCAAUGGAGGCAAUCAAUGUUUGAUUGCACAGUUCGUAAUAGUU-----GGUAAUACACAGCGGCGGCAUGU ..((((-------.....))))....((((((((((.(((((.(((((((.....)))))))....)))))....(((-----(........)))))))))))))) ( -29.90) >DroSim_CAF1 8760 94 - 1 UAUGUG-------GCCAACACAAAUUGCAUGUUGUCAAUGGAGGCAAUCAAUGUUUGAUUGCACAGCUCGUAAUAGUU-----GGUAAUACACAGCGGCGGCAUGU ..((((-------.....))))....((((((((((....((((((((((.....)))))))....)))......(((-----(........)))))))))))))) ( -30.30) >DroEre_CAF1 9219 92 - 1 UCUGUG-------GCCAACACAAAUUGCAUGUUGUCAAUGGAGGCAAUCAAUGUUUGAUUGC--AGUGGGUAAUAGUU-----GGUAAUACACGGCAGCGGCAUGU ..((((-------.....))))...(((.(((((((.......(((((((.....)))))))--.(((..........-----.......)))))))))))))... ( -25.63) >DroYak_CAF1 8867 104 - 1 UCUGUGGCUGGUGGCCAACACAAAUUGCAUGUUGUCAAUGGAGGCAAUCAAUGUUUGAUUGC--AGUGGGUAAUAGUUGUAAUGGUAACACACAGCAGCGGCAUGU .((((.(((((((((((..((((......((((..(.((....(((((((.....)))))))--.)).)..)))).))))..))))..))).)))).))))..... ( -30.60) >consensus UAUGUG_______GCCAACACAAAUUGCAUGUUGUCAAUGGAGGCAAUCAAUGUUUGAUUGC__AGUUCGUAAUAGUU_____GGUAAUACACAGCAGCGGCAUGU ..((((............))))....(((((((((...((...(((((((.....))))))).......(((.((.(......).)).))).))...))))))))) (-19.18 = -19.22 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:44 2006