| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,513,774 – 20,513,875 |
| Length | 101 |
| Max. P | 0.953527 |
| Location | 20,513,774 – 20,513,875 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 74.58 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -13.57 |
| Energy contribution | -14.82 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20513774 101 + 22224390 CAUUUAUGCA-CAUUUUUAUGCUGCAUUUUGUUAGUAAUUCACUUUCUGGCCUAGUAGCAGGUUUUUUCUUUUCCAGUGCGGGUGAAUUUCACCUCGCACUU .....(((((-(((....))).)))))(((((((.((..(((.....)))..)).))))))).............((((((((((.....)))).)))))). ( -26.50) >DroSec_CAF1 81659 98 + 1 -AUUUAUGCA-CUUUUGUAUGCUGCUUUUCGCUAGUAAUUUACUUUCUGGCCUAGUAGCUGGUUUUU--UUUUCCAGUGUGGGUGAAUUCCACCUCGCACUU -....(((((-....)))))((((((....(((((.((......)))))))..))))))(((.....--....)))(((((((((.....)))).))))).. ( -28.30) >DroEre_CAF1 80739 95 + 1 -AUUUAGGCG-UUGUUCGUAGCUG--UUUUGUUAGGGAAAUACUUACUGGCCUGGUAGCAAGU-UUU--UUUUCCAGUGCGGCUGAAUUUCACCUCGCUCGU -....(((.(-..((((..(((((--(.(((..((((((((..(((((.....)))))...))-)))--)))..))).))))))))))..).)))....... ( -22.90) >DroYak_CAF1 82917 92 + 1 ----UAAUCGAUUUUUAGUAUUGG--CUU--CUAGUAAACUACUUUCUGGCUUAGUAGCAGGUAUUU--UUUUCCAGUGAGGGUGAAUUUUACCUCGCACUU ----.....((.....(((((..(--((.--(((((.............)).))).)))..))))).--...))..((((((..........)))))).... ( -17.22) >consensus _AUUUAUGCA_CUUUUAGAAGCUG__UUUUGCUAGUAAAUUACUUUCUGGCCUAGUAGCAGGUUUUU__UUUUCCAGUGCGGGUGAAUUUCACCUCGCACUU ....................(((((.....(((((...........)))))...))))).................(((((((((.....)))).))))).. (-13.57 = -14.82 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:30 2006