Locus 8255

Sequence ID X_DroMel_CAF1
Location 20,499,043 – 20,499,134
Length 91
Max. P 0.537127
window13558

overview

Window 8

Location 20,499,043 – 20,499,134
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 83.04
Mean single sequence MFE -30.33
Consensus MFE -20.86
Energy contribution -21.67
Covariance contribution 0.81
Combinations/Pair 1.25
Mean z-score -1.67
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.537127
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20499043 91 + 22224390
AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA-AGUUCGAGGGCAUGUGUGUG-----
.......(((((((((--((((((((((.....((....)).((........)).....))))))))..(...-.)...)))))...)))))).----- ( -34.50)
>DroSec_CAF1 67341 91 + 1
AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA-AGUUCGAGGGCAUGUGUGUG-----
.......(((((((((--((((((((((.....((....)).((........)).....))))))))..(...-.)...)))))...)))))).----- ( -34.50)
>DroSim_CAF1 90773 91 + 1
AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA-AGUUCGAGGGCAUGUGUGUG-----
.......(((((((((--((((((((((.....((....)).((........)).....))))))))..(...-.)...)))))...)))))).----- ( -34.50)
>DroEre_CAF1 65865 95 + 1
AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCGCAUUGUCUGCCCAUCGGA-AGUUCGAGGGUCUGUGUGUGUGUG-
.....(.(((((((((--((((((((((.....((....)).((.(......).))...))))))))..(...-.)...)))))...)))))).)...- ( -35.00)
>DroAna_CAF1 50157 93 + 1
AUUAAGGGCGGAAUCUAUAAGGGCGGACUUAACGGAUUUUCAGCUCUAAUCUUCACAUUGUCUGUCCAUCAGA-ACUCGAAACUCGAGUGUCUG-----
.....((((...........((((((((.....(((((.........))))).......))))))))......-(((((.....))))))))).----- ( -24.30)
>DroPer_CAF1 88074 92 + 1
AUUAAGGGCGCAUU-------GACGGGCUUAACGGAUUUCCAGCUUUAAUCUGUACAUUGUCUGCCCAUCAAAAAACUCAAGAGCGUGUGUGUGUGUGU
.......((((((.-------.(((.((((.(((((((.........)))))))...(((.........))).........)))).)))..)))))).. ( -19.20)
>consensus
AUUAAGGACGCACUCC__UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA_AGUUCGAGGGCAUGUGUGUG_____
.......((((((.......((((((((....((((((.........))))))......)))))))).((((.....))))......))))))...... (-20.86 = -21.67 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:28 2006