| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,489,491 – 20,489,585 |
| Length | 94 |
| Max. P | 0.988604 |
| Location | 20,489,491 – 20,489,585 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 71.45 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -11.65 |
| Energy contribution | -12.03 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.988604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20489491 94 + 22224390 CAAAUACCUUCCUGAAGUCCUGUAGUUCCUGCAGCCUCUUUAAAAGUCAAGAAACACUCGAAGAGGCACUUGAGAACUAUUAAAAAAUCAGGCA-- ..........(((((......((((((((....((((((((...(((........))).))))))))....).))))))).......)))))..-- ( -24.82) >DroSec_CAF1 58011 85 + 1 CAAACACCUUCCAGCAAUU---------CUGCAGCUUCUUUGAAAGUCAAGAAACUCUCGAAGAGGCACUUGACAACUAUUGAAAAAUCAGACG-- .............(((...---------.))).((((((((((.(((......))).)))))))))).........(((((....))).))...-- ( -18.70) >DroSim_CAF1 68192 85 + 1 CAAACACCUUCCAGCAAUU---------CUGCAGCUUCUUUGAAAGUCGGGAAACACUCGAAGAGGCACUUGAGAACUAUUGAAAAAUCAGACG-- ........((((((((...---------.))).((((((((((......(....)..))))))))))...)).)))(((((....))).))...-- ( -18.10) >DroYak_CAF1 58180 74 + 1 CAACCACUG----------------------CAGCUCCUUUGAAAGCCAGCAAACACUCAAAGAGGCACUUGAAAAUUCGUGAAAAAUUCGUGAAA .........----------------------..((..((((((..............))))))..)).........(((((((.....))))))). ( -11.44) >consensus CAAACACCUUCCAGCAAUU_________CUGCAGCUUCUUUGAAAGUCAAGAAACACUCGAAGAGGCACUUGAGAACUAUUGAAAAAUCAGACA__ .................................((((((((((..((......))..))))))))))............................. (-11.65 = -12.03 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:25 2006