Locus 8252

Sequence ID X_DroMel_CAF1
Location 20,478,394 – 20,478,501
Length 107
Max. P 0.728930
window13554

overview

Window 4

Location 20,478,394 – 20,478,501
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.16
Mean single sequence MFE -23.26
Consensus MFE -22.80
Energy contribution -21.99
Covariance contribution -0.80
Combinations/Pair 1.09
Mean z-score -0.99
Structure conservation index 0.98
SVM decision value 0.42
SVM RNA-class probability 0.728930
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20478394 107 + 22224390
GAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCGGGGC-------------CGAUUUUAGGGGU
.((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))((((....)))-------------)............ ( -26.19)
>DroPse_CAF1 73921 120 + 1
GAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCAAUUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCUCUGGCACUCACUCACUCACUCAGUUUUAAGGGU
.((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).)))))).((....))............((((........)))) ( -19.99)
>DroSec_CAF1 51763 106 + 1
GAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCGGGCC-------------CGAU-UUAGGGGU
.((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).)))))).(((((.....-------------....-...))))) ( -24.99)
>DroEre_CAF1 49956 106 + 1
GAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCUCGGGCC-------------CAAU-UUAGGGGU
.((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))((((...))))-------------....-........ ( -22.29)
>DroYak_CAF1 52246 106 + 1
GAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCGGGCC-------------CAAU-UUAGGGGU
.((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).)))))).(((((.....-------------....-...))))) ( -24.99)
>DroPer_CAF1 75017 112 + 1
GAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCAAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCUCUGGCACUC--------ACUCAGUUUUAAGGGU
.((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).)))))).(((((...(((.--------....)))....))))) ( -21.09)
>consensus
GAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCGGGCC_____________CAAU_UUAGGGGU
.((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).)))))).(((((..........................))))) (-22.80 = -21.99 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:25 2006