| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,476,368 – 20,476,475 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 20,476,368 – 20,476,475 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.75 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -17.34 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20476368 107 - 22224390 UUAACGCCUCCCCUCGCUA------GUCCGCAUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGAGGCCCAAA-AAAAGCACCCAACACAACA .....(((((.....((..------....)).........((((((((((((((........)))))))........)))))))))))).....-................... ( -23.20) >DroSec_CAF1 49763 108 - 1 UUAAUGCCUCCCCUCGCUA------GUCCGCAUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGAGGCCAAAAAAAAAGCACCCAACACAACA .....(((((.....((..------....)).........((((((((((((((........)))))))........))))))))))))......................... ( -22.90) >DroSim_CAF1 55024 108 - 1 UUAAUGCCUCCCCUCGCUA------GUCCGCAUCCAAAGAUGAUUUUUGCUGACAGCCAACAGUCAGCGCCGUGUCAGAAAUCAGAGGCCAAAAAAAAAGCACCCAACACAACA .....(((((.....((..------....)).........((((((((((((((........)))))))........))))))))))))......................... ( -22.90) >DroEre_CAF1 47785 100 - 1 UUAAUGCCUCCCCUCGCCA------GUCCGCCUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGAGGC---AAAAAAAGCACCCAA-----CA ....((((((.....((..------....)).........((((((((((((((........)))))))........))))))))))))---)..............-----.. ( -23.40) >DroYak_CAF1 50186 103 - 1 UCAAUGCCUCCCCUCGCUA------GUCCGCAUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGAGGCCCAAAAAAAAGCACCCAA-----CA .....(((((.....((..------....)).........((((((((((((((........)))))))........))))))))))))..................-----.. ( -22.90) >DroAna_CAF1 30080 95 - 1 CCUCUAGCUACCCUCGCUAACUGGCGGCCUUAUUCAAAAAUGAUUUUAGCUGACAGCCAACAGUCAGCGCCGUGUCAGAAAUCACGACCCAAAAA------------------- ....((((.......)))).((((((((.....(((....))).....((((((........)))))))))))..))).................------------------- ( -22.80) >consensus UUAAUGCCUCCCCUCGCUA______GUCCGCAUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGAGGCCAAAAAAAAAGCACCCAA_____CA .....(((((.....((............)).........((((((((((((((........)))))))........))))))))))))......................... (-17.34 = -17.62 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:24 2006