Locus 8250

Sequence ID X_DroMel_CAF1
Location 20,474,118 – 20,474,223
Length 105
Max. P 0.509688
window13552

overview

Window 2

Location 20,474,118 – 20,474,223
Length 105
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 62.27
Mean single sequence MFE -20.77
Consensus MFE -11.32
Energy contribution -12.00
Covariance contribution 0.68
Combinations/Pair 1.27
Mean z-score -1.20
Structure conservation index 0.55
SVM decision value -0.05
SVM RNA-class probability 0.509688
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20474118 105 + 22224390
UGCAUUCAAAGUGGCAGU----AUA--UGUUUAGCGUUUUACUUAAGGCGUUUUGAAAAUAUGAUGCCAAAAAUUCUCUUGUAUA----UAUACAAGAUUAGUGUCUGUGUGCA-U
(((((.((...(((((.(----(((--(.(((((((((((....)))))))..)))).))))).))))).......(((((((..----..)))))))........)).)))))-. ( -28.00)
>DroSim_CAF1 52804 96 + 1
UGCAUUUAUAGUGGCAGU----AU---UGUUU-------------AGGCGUUUUGACAAUAUGAUGCCAAAAAUUCGCUUAUAUACAUAUGUACAAGACUAGUGCCUGUGUGCAAU
(((........(((((((----((---((((.-------------.........))))))))..)))))...............(((((.((((.......)))).)))))))).. ( -22.40)
>DroYak_CAF1 48073 96 + 1
UGU-UAUUUAGUGGCAAUUAGCAUAGUUUUUAA-------------ACUAUUUCAAGAAUAUGAUACCAACACAAUGCUUAU--A----CGUAUAAAAUUCGUGUCUGUGUACAAC
...-......(((((.....))((((((....)-------------)))))...................))).((((..((--(----((.........)))))..))))..... ( -11.90)
>consensus
UGCAUUUAUAGUGGCAGU____AUA__UGUUUA____________AGGCGUUUUGAAAAUAUGAUGCCAAAAAUUCGCUUAUAUA____UGUACAAGAUUAGUGUCUGUGUGCAAU
(((((.......((((..............................((((((..........)))))).........(((((((......))))))).....))))...))))).. (-11.32 = -12.00 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:23 2006