Locus 8248

Sequence ID X_DroMel_CAF1
Location 20,470,943 – 20,471,063
Length 120
Max. P 0.610569
window13549

overview

Window 9

Location 20,470,943 – 20,471,063
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.67
Mean single sequence MFE -47.55
Consensus MFE -25.45
Energy contribution -25.57
Covariance contribution 0.12
Combinations/Pair 1.27
Mean z-score -2.13
Structure conservation index 0.54
SVM decision value 0.16
SVM RNA-class probability 0.610569
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20470943 120 + 22224390
UCGGGACUUCUUGGCCGCUCAGGCGGCAUCCUUUGAGGUGGCCGGCAUUGAGACCUGCUCGGCGAGCAUGUCCUUCGCCCUCUACGAGUUGGCCAAACAACCCCUGAUGCAGUCGCGCCU
(((((.....((((((((((.(((.((.((....)).)).)))(((...(.(((.(((((...))))).))))...)))......))).)))))))......))))).((....)).... ( -43.90)
>DroVir_CAF1 66207 120 + 1
UCAAGACUUUCUGGCCGCCCAAGCGGCCAGCUUCGAAGUGGCGGGCAUUGAGACAUGCUCGUCGACCAUGUCCUUCGCCCUGUACGAGCUGGCCAAGCAGCCGCUGAUGCAGGAGCGAUU
.....(((((((((((((....))))))))....)))))(((((((((......)))))))))...........((((((((((..(((.(((......))))))..)))))).)))).. ( -54.90)
>DroGri_CAF1 63974 120 + 1
CCAAGACUUUCUGGCCGCCCAAGCGGCCAGCUUUGAGGUCGCCGGCAUUGCCACAUGCUCGGCCACCUUGUCCUUUGCUCUAUACGAGCUGGCCAAACAGCCGCUCAUCCAGGAGCGACU
....(((...((((((((....))))))))....(((((.((((((((......)))).)))).))))))))..(((((((....((((.(((......))))))).....))))))).. ( -54.30)
>DroWil_CAF1 66759 120 + 1
UCAGGAUUUUCUAGCCGCCCAAGCGGCCAGCUUCGAGGUGGCUGGCAUUGAGACAUGCUCAUCCAGUAUGUCCUUUGCCCUAUUCGAGUUGGCCAAACAACCCUUGAUGCAGGCACGCCU
(((((...........((....))((((((((.((((.(((..((((..(.((((((((.....)))))))))..)))))))))))))))))))........)))))...(((....))) ( -44.20)
>DroMoj_CAF1 97201 120 + 1
UCAGGACUUUCUGGCCGCCCAGGCGGCCACCUUCGAGGUGGCCGGCAUCGAGACAUGCUCCUCAACGAUGUCCUUCGCCCUAUACGAGCUGGCCAAGCAGCCGCUAAUGCAGGAGCGGCU
.((((....))))(((((((.((((((((((.....)))))))(((((((((........)))...))))))....))).......(((.(((......))))))......)).))))). ( -51.30)
>DroAna_CAF1 24358 120 + 1
UCGCGACUUCCUAGCCGCCCAGGCGGCGUCCUUUGAAGUGGCCGGCAUUGAGACCUGUUCCUCCAGCAUGUCCUUCGCCCUCUACGAGCUCGCCCGCCACCCCCUCAUGCAGUCCCGCCU
.((.((((.....(((((....)))))..........(((((.(((.....(((.((((.....)))).))).((((.......))))...))).)))))..........)))).))... ( -36.70)
>consensus
UCAGGACUUUCUGGCCGCCCAAGCGGCCACCUUCGAGGUGGCCGGCAUUGAGACAUGCUCGUCCACCAUGUCCUUCGCCCUAUACGAGCUGGCCAAACAGCCCCUGAUGCAGGAGCGCCU
.....(((((...(((((....))))).......)))))(((((((.....((((((.........))))))..(((.......)))))))))).......................... (-25.45 = -25.57 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:20 2006