Locus 8247

Sequence ID X_DroMel_CAF1
Location 20,469,480 – 20,469,581
Length 101
Max. P 0.869980
window13548

overview

Window 8

Location 20,469,480 – 20,469,581
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 66.71
Mean single sequence MFE -37.68
Consensus MFE -23.72
Energy contribution -22.72
Covariance contribution -1.00
Combinations/Pair 1.55
Mean z-score -1.37
Structure conservation index 0.63
SVM decision value 0.87
SVM RNA-class probability 0.869980
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20469480 101 - 22224390
-------------------GGACCCGGCUGGUUGAGUGACUCACCUCCUCCAUCAGCGAGAACAUCUGUUUCAGCUUGGCGCCAGCGAAGGCUGGUGCUAAACGGGUGCGGAUCUCGCGC
-------------------..(((((((((((.(((.((......))))).))))))((((.(....)))))...(((((((((((....))))))))))).)))))(((.....))).. ( -46.00)
>DroVir_CAF1 64748 98 - 1
--GGC---CAAC-----------------UAGGCAGACACUAACCUCCUCCAUGAGUGAGAACAUUUGCUUGAUCUUGGCGCCGGUGAAGACCGGCGAGAGUCGCGUGCGUAUUUCGCGC
--.((---(((.-----------------((((((((.......((((((...))).)))....))))))))...)))))((((((....)))))).........(((((.....))))) ( -34.00)
>DroGri_CAF1 62814 104 - 1
--GUUGUUUUGCG------UU--------UGUCUUUGGACUCACCUCUUCCAUGAGUGAGAACAUUUGCUUGAUCUUGGCGCCGGUGAAGACCGGCGAGAGUCUUGUGCGAAUGUCGCGC
--........(((------..--------..........(((((.((......))))))).((((((((..((.(((..(((((((....))))))).)))))....))))))))))).. ( -37.10)
>DroYak_CAF1 43311 95 - 1
-------------------G------GCUGGUUGGGUGACUCACCUCCUCCAUCAGCGAGAACAUCUGUUUCAGCUUGGCGCCGGCGAAGGCGGGUGCUAAACGGGUGCGGAUCUCGCGC
-------------------(------(..(((.((....)).))).)).......((((((...(((((.((.(.((((((((.((....)).)))))))).).)).))))))))))).. ( -43.70)
>DroMoj_CAF1 94768 98 - 1
--GGC---UCGC-----------------AGUUUAUUGACUUACCUCCUCCAUGAGUGAGAACAUUUGCCUGAUCUUGGCGCCGGUGAAGACCGGCGAGAGUCUAGUGCGAAUUUCACGC
--...---((((-----------------(.(.....(((((..((((((...))).))).......(((.......)))((((((....))))))..))))).).)))))......... ( -31.70)
>DroAna_CAF1 22472 120 - 1
CCCCCCCAUCACCCAUCACCCACCCCCUUUGGCGCAUGACUCACCUCCUCCAUCAGAGAGAACAUCUGCUUGAGCUUGGCGCCCGCGAACGCGGGAUCGAGUCGCGUGCGAAUCUCGCGC
...............................((((..(((((.((..(((...((((.......))))...)))...))..(((((....)))))...)))))))))(((.....))).. ( -33.60)
>consensus
__G_C___U__C_________________UGUUGAGUGACUCACCUCCUCCAUCAGUGAGAACAUCUGCUUGAGCUUGGCGCCGGCGAAGACCGGCGAGAGUCGCGUGCGAAUCUCGCGC
.......................................................((((((...(((((.((.......(((((((....))))))).......)).))))))))))).. (-23.72 = -22.72 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:19 2006