Locus 8246

Sequence ID X_DroMel_CAF1
Location 20,464,806 – 20,464,914
Length 108
Max. P 0.740048
window13547

overview

Window 7

Location 20,464,806 – 20,464,914
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 95.74
Mean single sequence MFE -31.94
Consensus MFE -30.98
Energy contribution -30.26
Covariance contribution -0.72
Combinations/Pair 1.12
Mean z-score -1.14
Structure conservation index 0.97
SVM decision value 0.45
SVM RNA-class probability 0.740048
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20464806 108 + 22224390
AUGUGUAUCUCAUAGAUAUGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAUGUGCAUAUCUGGGAAAUCUCGAAG
...((((((....(((.......))))))))).....(((..((((..((((((..((..(((((((.....)))))))....))..))))))))))..)))...... ( -29.40)
>DroSec_CAF1 38168 108 + 1
AUGUGUAUCUCAUAGAUACGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGAAG
((.((((((.....)))))).))..............(((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..)))...... ( -31.60)
>DroSim_CAF1 43277 108 + 1
AUGUGUAUCUCAUAGAUACGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGAAG
((.((((((.....)))))).))..............(((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..)))...... ( -31.60)
>DroEre_CAF1 36217 108 + 1
AUGUGUAUCUCAUAGAUAUGGAUUCUGAUACAAGUAAGGUAGCCCACCGAUGUGUGCAAUUGCUUCGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGGAG
...((((((....(((.......)))))))))....((((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..))))..... ( -34.50)
>DroYak_CAF1 36994 108 + 1
AUGUGUAUCUCAUAGAUAUGGAUUCUGAUACAAGUACGGUAGUCCACCGAUGUGUGCGAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUUGGAG
........(((..((((.(((((((((.((....))))).))))))(((((((((((((.(((((((.....))))))).))..))))))))).))...))))..))) ( -32.60)
>consensus
AUGUGUAUCUCAUAGAUAUGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGAAG
...((((((....(((.......))))))))).....(((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..)))...... (-30.98 = -30.26 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:18 2006