Locus 8242

Sequence ID X_DroMel_CAF1
Location 20,459,086 – 20,459,179
Length 93
Max. P 0.996274
window13540

overview

Window 0

Location 20,459,086 – 20,459,179
Length 93
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 76.49
Mean single sequence MFE -33.68
Consensus MFE -20.62
Energy contribution -20.78
Covariance contribution 0.17
Combinations/Pair 1.05
Mean z-score -3.75
Structure conservation index 0.61
SVM decision value 2.68
SVM RNA-class probability 0.996274
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20459086 93 + 22224390
--CAA-------GGGAUGGAAUCCGAGGCGCGAAAUUGCGAAAUUAAAUUUGCAGUUAUUGCGCAACCAUGGAAAAUUGGUUAGCGCCGCCUGUCUAUCUC--A
--...-------((((((((.....(((((...(((((((((......)))))))))...(((((((((........))))).))))))))).))))))))--. ( -37.20)
>DroVir_CAF1 54633 91 + 1
GCAGC-------GGGGCG-GACGAAAGGCGCGAAAUUGCAAAAUUAAAUUUGCAGUUAUUGCGCAACCAUGGAGAAUUGGUUACACUG---UAACGGUAUA--A
....(-------(..(((-(.(....)(((((((((((((((......))))))))).))))))(((((........)))))...)))---)..)).....--. ( -31.20)
>DroEre_CAF1 30468 93 + 1
--CGA-------GGGAUGGAAUCCGAGGCGCGAAAUUGCGAAAUUAAAUUUGCAGUUAUUGCGCAACCAUGGAAAAUUGGUUAGCGCCGCCUGUCUAUCUC--A
--...-------((((((((.....(((((...(((((((((......)))))))))...(((((((((........))))).))))))))).))))))))--. ( -37.20)
>DroYak_CAF1 31248 93 + 1
--CAA-------GGGAUGGGAUCCGAGGCGCGAAAUUGCGAAAUUAAAUUAGCAGUUAUUGCGCAACCAUGGAAAAUUGGUUAGCGCCGCCUGUCUAUCUC--A
--...-------((((((((.....(((((...((((((............))))))...(((((((((........))))).))))))))).))))))))--. ( -33.30)
>DroMoj_CAF1 72438 90 + 1
GAGGC-------GGGGCGGGGCGAAAGGCGCGAAAUUGCAAAU--UAAUUUGCAGUUAUUGCGCAACCAUGGAGAAUUGGUUACCGUG---UAACGGUAUA--A
....(-------(..(((.(((....)(((((((((((((((.--...))))))))).))))))(((((........))))).)).))---)..)).....--. ( -32.20)
>DroAna_CAF1 11960 102 + 1
--CCAAAUGGGGGCAAUUGAAUCCGAGGCGCGAAAUUGCGAAAUUAAAUUUGCAGUUAUUGCCCAACCAUUGAAAAUUGGUUAGCGCCGCCUGUCUAUCCUUGU
--((....))((((..(((....)))(((((..(((((((((......))))))))).......(((((.(....).))))).)))))))))............ ( -31.00)
>consensus
__CGA_______GGGAUGGAAUCCGAGGCGCGAAAUUGCGAAAUUAAAUUUGCAGUUAUUGCGCAACCAUGGAAAAUUGGUUAGCGCCGCCUGUCUAUCUC__A
...........................(((((((((((((((......))))))))).))))))(((((........)))))...................... (-20.62 = -20.78 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:12 2006