Locus 8241

Sequence ID X_DroMel_CAF1
Location 20,458,207 – 20,458,313
Length 106
Max. P 0.553066
window13539

overview

Window 9

Location 20,458,207 – 20,458,313
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.74
Mean single sequence MFE -24.06
Consensus MFE -7.52
Energy contribution -7.96
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.31
SVM decision value 0.04
SVM RNA-class probability 0.553066
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20458207 106 + 22224390
CGCAACUCUGCAACUCUGCUACUGAGUAGCACAGCGACUCCA-------CCC-AAAAAGUGCAGUCGAUACUUUUGUAUCUAUGUA----GCUGAUUC--UAUCCUUUGUUUACACAAUG
.((.((((.(((....)))....)))).)).((((((((.((-------(..-.....))).))))(((((....)))))......----))))....--.................... ( -27.90)
>DroSec_CAF1 31993 113 + 1
CGCAACUCUGGAACUCUGCAACUCUGCAACUCUGCUACUCAGCGACUCCCCC-AUAAAGUGCAGCAGAUACUUUUGUAUCUAUGUA----GCUGAUGC--UAUCCAUUGUUUACACAAUG
...(((..((((....((((....)))).....((...((((((.......)-......((((..((((((....)))))).))))----))))).))--..))))..)))......... ( -25.10)
>DroSim_CAF1 36851 107 + 1
CGCAACUCUGGAACUCUGCAACUCUGCUACUCUGCUACUCAGC------CCC-AAAAAGUGCAGCAGAUACUUUUGUAUCUAUGUA----GCUGAUGC--UAUCCAUUGUUUACACAAUG
...(((..((((.....(((..((.(((((.((((.(((....------...-....))))))).((((((....))))))..)))----)).)))))--..))))..)))......... ( -25.80)
>DroEre_CAF1 29551 106 + 1
CGGAACUCCGCAACUCCGCAACUC-GCGACUCUGCAACUG--------CCCC-AAAAACUGCAGUCGAUACGUUUGUUUCUAUGUA----UCUAGUAGCAGAUACUUUGUUUACACAAUG
.((....))((((...(((.....-)))..(((((.((((--------(...-.......))))).(((((((........)))))----)).....)))))....)))).......... ( -23.90)
>DroYak_CAF1 30322 95 + 1
--CAACUCCGCAACUCUGC---------------CAACUC--------CCCCGAAAAACUGCAGUCGAUACUUUUGUAUCUAUGUGUGUACGUAGUAGCAGAUACAUUGUUUACACAAUG
--.......(((....)))---------------......--------..........((((....(((((....)))))(((((....)))))...))))...((((((....)))))) ( -17.60)
>consensus
CGCAACUCUGCAACUCUGCAACUC_GCAACUCUGCAACUC________CCCC_AAAAAGUGCAGUCGAUACUUUUGUAUCUAUGUA____GCUGAUAC__UAUCCAUUGUUUACACAAUG
...........................................................((((...(((((....)))))..))))..................((((((....)))))) ( -7.52 =  -7.96 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:11 2006