Locus 8237

Window 0

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20451310 107 + 22224390
AAAAA----U----CGUGGAGCUGCGGCAUCUUCUGCUUUUGACACAAGUUAAUGAGUUUCGCGCUUUUGCGCCUGCCAAAUGCCACCAGUGGGUGUACUUAAAACUCCAACCAA
.....----.----..(((((....((((......(((((((((....))))).))))...((((....)))).))))......((((....)))).........)))))..... ( -27.90)
>DroVir_CAF1 41487 95 + 1
---------UUUCUUGGGGAGC----------UCUGCGCCUGACACAAGUUAAUGAGUUUCGCGCUUUUGCGCCAGCCAAAUGCCACCAUCGGGUGCACUUAAUU-CCCAACAAC
---------....(((((((..----------..(((((((((.....((...((.(((..((((....)))).)))))...)).....))))))))).....))-))))).... ( -32.10)
>DroPse_CAF1 43290 103 + 1
-ACAGCCCCUG---GGCUGUGCUGUGGCAUCUUCUGCUCUUGACACAAGUUAAUGAGUUUCGCGCUUUCGCGCCUGCCAAAUGCCACCAUCGGGUGUACUUAACGCU--------
-((((((....---))))))((..(((((......(((((((((....))))).))))...((((....)))).)))))...))((((....))))...........-------- ( -36.90)
>DroYak_CAF1 22900 107 + 1
-AAAA----UU---GCUGGAGCUGCGGCCUCUUCUGCUUUUGACACAAGUUAAUGAGUUUCGCGCUUUUGCGCCUGCCAAAUGCCACCAGCGGGUGUACUUAAAACUCCAACCAC
-....----.(---(((((.((...(((.......(((((((((....))))).))))...((((....))))..)))....))..))))))((.((.......)).))...... ( -27.60)
>DroMoj_CAF1 55296 100 + 1
GCCCA----UUUCUUGGGGAGC----------UCUGCGCCUGACACAAGUUAAUGAGUUUCGCGCUUUCGCGCCAGCCAAAUGCCACCAUCGGGUGCACUUAAUU-UCCAACAAC
.....----....((((..(..----------..(((((((((.....((...((.(((..((((....)))).)))))...)).....))))))))).....).-.)))).... ( -28.90)
>DroPer_CAF1 43757 103 + 1
-ACAGCCCGUG---GGCUGUGCUGUGGCAUCUUCUGCUCUUGACACAAGUUAAUGAGUUUCGCGCUUUUGCGCUUGCCAAAUGCCACCAUCGGGUGUACUUAACGCU--------
-((((((....---))))))((..(((((......(((((((((....))))).))))...((((....)))).)))))...))((((....))))...........-------- ( -38.00)
>consensus
_ACAA____UU___GGCGGAGCUG_GGCAUCUUCUGCUCUUGACACAAGUUAAUGAGUUUCGCGCUUUUGCGCCUGCCAAAUGCCACCAUCGGGUGUACUUAAAACUCCAAC_AC
....................((...(((.......(((((((((....))))).))))...((((....))))..)))....))((((....))))................... (-14.87 = -16.32 +   1.44) 

Postscript

Postscript

Postscript

Window 1

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20451310 107 - 22224390
UUGGUUGGAGUUUUAAGUACACCCACUGGUGGCAUUUGGCAGGCGCAAAAGCGCGAAACUCAUUAACUUGUGUCAAAAGCAGAAGAUGCCGCAGCUCCACG----A----UUUUU
.....(((((((...(((......))).(((((((((.((..((((....))))((.((..........)).))....))...))))))))))))))))..----.----..... ( -32.30)
>DroVir_CAF1 41487 95 - 1
GUUGUUGGG-AAUUAAGUGCACCCGAUGGUGGCAUUUGGCUGGCGCAAAAGCGCGAAACUCAUUAACUUGUGUCAGGCGCAGA----------GCUCCCCAAGAAA---------
.((.(((((-...((((((((((....))).)))))))(((.((((....((((((...........))))))...))))..)----------))..))))).)).--------- ( -32.10)
>DroPse_CAF1 43290 103 - 1
--------AGCGUUAAGUACACCCGAUGGUGGCAUUUGGCAGGCGCGAAAGCGCGAAACUCAUUAACUUGUGUCAAGAGCAGAAGAUGCCACAGCACAGCC---CAGGGGCUGU-
--------.((((.....))........(((((((((.((..((((....))))............((((...)))).))...))))))))).))((((((---....))))))- ( -41.00)
>DroYak_CAF1 22900 107 - 1
GUGGUUGGAGUUUUAAGUACACCCGCUGGUGGCAUUUGGCAGGCGCAAAAGCGCGAAACUCAUUAACUUGUGUCAAAAGCAGAAGAGGCCGCAGCUCCAGC---AA----UUUU-
...(((((((((....((.((((....))))))....(((..((((....))))............(((.(((.....))).)))..)))..)))))))))---..----....- ( -34.50)
>DroMoj_CAF1 55296 100 - 1
GUUGUUGGA-AAUUAAGUGCACCCGAUGGUGGCAUUUGGCUGGCGCGAAAGCGCGAAACUCAUUAACUUGUGUCAGGCGCAGA----------GCUCCCCAAGAAA----UGGGC
.((.((((.-...((((((((((....))).)))))))(((.((((....)))).............(((((.....))))))----------))...)))).)).----..... ( -30.60)
>DroPer_CAF1 43757 103 - 1
--------AGCGUUAAGUACACCCGAUGGUGGCAUUUGGCAAGCGCAAAAGCGCGAAACUCAUUAACUUGUGUCAAGAGCAGAAGAUGCCACAGCACAGCC---CACGGGCUGU-
--------.((((.....))........(((((((((.((..((((....))))............((((...)))).))...))))))))).))((((((---....))))))- ( -37.50)
>consensus
GU_GUUGGAGAAUUAAGUACACCCGAUGGUGGCAUUUGGCAGGCGCAAAAGCGCGAAACUCAUUAACUUGUGUCAAGAGCAGAAGAUGCC_CAGCUCCACC___AA____UUGU_
......(((((........((((....))))((.((((((..((((....))))(.....)..........)))))).)).............)))))................. (-21.35 = -22.38 +   1.03) 

Postscript

Postscript

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:04 2006