Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,448,826 – 20,448,944 |
Length | 118 |
Max. P | 0.976130 |
Location | 20,448,826 – 20,448,927 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -23.88 |
Energy contribution | -23.92 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.49 |
Structure conservation index | 0.63 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20448826 101 - 22224390 AGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCGGAAGGC----------------CAAACGAUGUGGGGGAAUGAUUUAAU ...((((((.((.(((...(((.((((.(((((((.((.(....)..)).))))))).)))).))).(....)))----------------)..))....))))))........... ( -33.80) >DroSec_CAF1 22659 100 - 1 AGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUAAUGAC-----------------CCACGAGGUGGGGGAAUGAUUUAAU ...((((((.((((((..((((.((((.(((((((.((.(....)..)).))))))).))))..)))).....))-----------------))))....))))))........... ( -39.60) >DroSim_CAF1 27486 101 - 1 AGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUGAUGAA----------------CCAACGAGGUGGGGGAAUGAUUUAAU ...((((((.((.(((..((((.((((.(((((((.((.(....)..)).))))))).))))..))))......)----------------)).))....))))))........... ( -33.60) >DroEre_CAF1 20133 117 - 1 AGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGGGGAAACUUCACCUAUGGCGGCUUGAAAACUGAAGACCAUAAUGGGCUGCGCACAAACGAGGCGGGGAAAUGAUUUAAU ...((((...((..((((((((.((((.(((((((.((((....).))).))))))).)))).))......((.((.....)).))))))))..)).....))))............ ( -40.70) >DroYak_CAF1 20367 117 - 1 AGGCCCCCAAGUGGGUGUGUUUGAGGUGGCCAUAGUUGGGGAAACUUCACUUAUGGCGGCUUGCAAACUGAGGACCAUAAUGGGCUGAUGGCAAACGAGGCGGGCAAUCGAUUUUAU ..(((((((.((((....(((((((((.((((((((..((....))..)).)))))).)))).)))))......))))..)))(((..((.....)).)))))))............ ( -42.80) >consensus AGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUGAAGAC________________CAAACGAGGUGGGGGAAUGAUUUAAU ...(((((((((.(.((((..((((((..((........))..))))))..)))).).)))))....(....)............................))))............ (-23.88 = -23.92 + 0.04)
Location | 20,448,852 – 20,448,944 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 92.72 |
Mean single sequence MFE | -32.54 |
Consensus MFE | -28.82 |
Energy contribution | -28.50 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.72 |
Structure conservation index | 0.89 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20448852 92 - 22224390 AACUGCUUAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCGGAAGGC-- ..((((((........((.((((......)))).))..(.((((.(((((((.((.(....)..)).))))))).)))).))))))).....-- ( -32.20) >DroSec_CAF1 22684 92 - 1 AACUGCUUAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUAAUGAC-- ......(((((.....((.((((......)))).))(((.((((.(((((((.((.(....)..)).))))))).)))).))))))))....-- ( -29.50) >DroSim_CAF1 27512 92 - 1 AACUGCUUAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUGAUGAA-- ......(((((.....((.((((......)))).))(((.((((.(((((((.((.(....)..)).))))))).)))).))))))))....-- ( -29.60) >DroEre_CAF1 20173 94 - 1 AACUGCUCAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGGGGAAACUUCACCUAUGGCGGCUUGAAAACUGAAGACCA ......(((((.....((.((((......)))).))(((.((((.(((((((.((((....).))).))))))).)))).))))))))...... ( -35.80) >DroYak_CAF1 20407 94 - 1 AACUGCUUAGUGUGACCAGGCCCCCAAGUGGGUGUGUUUGAGGUGGCCAUAGUUGGGGAAACUUCACUUAUGGCGGCUUGCAAACUGAGGACCA .....((((((.((..(((((((((....))).).)))))((((.((((((((..((....))..)).)))))).)))).)).))))))..... ( -35.60) >consensus AACUGCUUAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUGAAGAC__ ......(((((.....((.((((......)))).))(((.((((.(((((((.((.(....)..)).))))))).)))).))))))))...... (-28.82 = -28.50 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:03 2006