| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,446,098 – 20,446,209 |
| Length | 111 |
| Max. P | 0.649678 |
| Location | 20,446,098 – 20,446,209 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 90.37 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -20.84 |
| Energy contribution | -20.48 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20446098 111 - 22224390 ----AUUUUAAUACCUUGUAAGCGAAAUACAUUGAAAAUAGCACAGCGCACAUUUCUCGCGUCGUGUGUAGUUUUCCAUUAAUUGGAUUUAGCAGCUAGCUCCAUCAAAGUGGAU ----.............((.(((.................((((.((((.........)))).))))...(((.((((.....))))...))).))).))(((((....))))). ( -24.00) >DroSec_CAF1 19441 108 - 1 -------UUAAUAGCUUGUAAGCCAAAUACAUUGAAAACAGCACAGCGCACAUUUCUCAUGUCGUGUGUAGUUUUCCAUUAAUUGGAUUUAGCAGCUAGCUCCAUCAAAGUGGAU -------....(((((..((((((((.((.((.((((((.(((((.((.((((.....))))))))))).)))))).)))).)))).))))..)))))..(((((....))))). ( -29.70) >DroSim_CAF1 24152 108 - 1 -------UUAAUAGCUUGUAAGCCAAAUACAUUGAAAACAGCACAGCGCACAUUUCUCAUAUCGUGUGUAGUUUUCCAUUAAUUGGAUUUAGCAGCCAGCUCCAUCAAAGUGGAU -------......(((..((((((((.((.((.((((((.(((((.((..............))))))).)))))).)))).)))).))))..)))....(((((....))))). ( -21.84) >DroEre_CAF1 17447 114 - 1 GCC-CUUUUAAUAACAUGUAAGCCAAAUACUUUGAAGGCAGCACAGCGCACAUUUCUCAUGUCGUGUGUAGUUUUCCAUUAAUUGGAUUUAGCAGCUAGCUCCAUCAAAGUGGAU ...-.......................((((((((.((.(((..(((((((((..(....)..)))))).(((.((((.....))))...))).))).))))).))))))))... ( -30.00) >DroYak_CAF1 17732 115 - 1 GCCCCUUUUAAUGGCAUGUAAGCCAAAUACUUUGGGAACAGCACAGCGCACAUUUCUCAUGUCGUGUGUAGUUUUCCAUUAAUUGGAUUUAGCAGAUAGCUCCAUCAAAGUGGAU ..(((......((((......))))........)))(((.(((((.((.((((.....))))))))))).))).((((((...((((.(((.....))).))))....)))))). ( -29.44) >consensus _____UUUUAAUAGCUUGUAAGCCAAAUACAUUGAAAACAGCACAGCGCACAUUUCUCAUGUCGUGUGUAGUUUUCCAUUAAUUGGAUUUAGCAGCUAGCUCCAUCAAAGUGGAU ..................((((((((.((....((((((.(((((.((.((((.....))))))))))).))))))...)).)))).))))((.....))(((((....))))). (-20.84 = -20.48 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:59 2006