Locus 8231

Sequence ID X_DroMel_CAF1
Location 20,439,098 – 20,439,198
Length 100
Max. P 0.870257
window13521

overview

Window 1

Location 20,439,098 – 20,439,198
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -22.43
Consensus MFE -22.43
Energy contribution -22.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 1.00
SVM decision value 0.87
SVM RNA-class probability 0.870257
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20439098 100 - 22224390
CUUCCAAUCAGCGGAUCCGAUGGCAGCGCAUUUUUCUCGUCUCACAACAAAAACACAAACACGCCGGCAAGAGCGAGGAAAAAUCGCAAAAAGGAAACAA
.((((..(((.((....)).)))..(((..(((((((((.(((...........................))))))))))))..))).....)))).... ( -22.43)
>DroSec_CAF1 12642 100 - 1
CUUCCAAUCAGCGGAUCCGAUGGCAGCGCAUUUUUCUCGUCUCACAACAAAAACACAAACACGCCGGCAAGAGCGAGGAAAAAUCGCAAAAAGGAAACAA
.((((..(((.((....)).)))..(((..(((((((((.(((...........................))))))))))))..))).....)))).... ( -22.43)
>DroSim_CAF1 15334 100 - 1
CUUCCAAUCAGCGGAUCCGAUGGCAGCGCAUUUUUCUCGUCUCACAACAAAAACACAAACACGCCGGCAAGAGCGAGGAAAAAUCGCAAAAAGGAAACAA
.((((..(((.((....)).)))..(((..(((((((((.(((...........................))))))))))))..))).....)))).... ( -22.43)
>consensus
CUUCCAAUCAGCGGAUCCGAUGGCAGCGCAUUUUUCUCGUCUCACAACAAAAACACAAACACGCCGGCAAGAGCGAGGAAAAAUCGCAAAAAGGAAACAA
.((((..(((.((....)).)))..(((..(((((((((.(((...........................))))))))))))..))).....)))).... (-22.43 = -22.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:56 2006