Locus 8230

Sequence ID X_DroMel_CAF1
Location 20,438,003 – 20,438,098
Length 95
Max. P 0.567355
window13520

overview

Window 0

Location 20,438,003 – 20,438,098
Length 95
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 87.86
Mean single sequence MFE -23.30
Consensus MFE -16.16
Energy contribution -16.97
Covariance contribution 0.81
Combinations/Pair 1.10
Mean z-score -1.61
Structure conservation index 0.69
SVM decision value 0.07
SVM RNA-class probability 0.567355
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20438003 95 - 22224390
AGAGCAGCAUCAGUAGGCAUUUGUUUUCCAUUUGGGGAUUUUCAUCCGCAAAAUACUCAAAUGC---UUGCUGCAGUGAAAUAAUAAACAUGUGUAUG
.......((((((((((((((((.......((((.((((....)))).)))).....)))))))---))))))..))).................... ( -25.60)
>DroSim_CAF1 14236 95 - 1
AGAGCAGCAUCAGUAGGCAUUUGAUUUCCAUUUGGGGGUUUUCAUCCGAAAAAUACUCAAAUGC---UUGCUGCAGUAAAAUAAUAAACAUGUGUAUG
...((((((......((((((((((..((....))..)(((((....)))))....))))))))---)))))))........................ ( -25.10)
>DroEre_CAF1 10127 96 - 1
AGAGCAGCAUCAGUAGGCAUUUGUUUUCCAUUUGGG-GCUUUCAUCCGCAAAAUACUCAAAUGGUGUUUGCUGCAGUAA-GUAAUAAACUUGUGUAUA
...((((((.((..((((....)))).(((((((((-..(((........)))..)))))))))))..))))))..(((-((.....)))))...... ( -22.30)
>DroYak_CAF1 9798 97 - 1
AGAGCAGCAUCAGUAGGCAUUUGCUUUCCUUUUGGCGUCUUUUAUCCGCAAAAUACUCAAAUGCCGUUU-CUGCAGUAAAAUAAUAAGCUUGUGCAUA
......((((.(((.((((((((......(((((.((.........)))))))....))))))))((..-..)).............))).))))... ( -20.20)
>consensus
AGAGCAGCAUCAGUAGGCAUUUGUUUUCCAUUUGGGGGCUUUCAUCCGCAAAAUACUCAAAUGC___UUGCUGCAGUAAAAUAAUAAACAUGUGUAUA
...((((((......((((((((.........((((........)))).........))))))))...)))))).............((....))... (-16.16 = -16.97 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:55 2006