Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,305,273 – 2,305,369 |
Length | 96 |
Max. P | 0.668770 |
Location | 2,305,273 – 2,305,369 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 86.35 |
Mean single sequence MFE | -39.63 |
Consensus MFE | -33.90 |
Energy contribution | -34.55 |
Covariance contribution | 0.65 |
Combinations/Pair | 1.13 |
Mean z-score | -1.68 |
Structure conservation index | 0.86 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2305273 96 + 22224390 AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGU------GGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC ..(((((..(((((((((((..(.((((.....)))).)........((((.------..)))))))))))))))....)).)))................. ( -38.40) >DroSec_CAF1 3248 102 + 1 AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC ..(((((....((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))...)).)))................. ( -41.80) >DroSim_CAF1 4050 102 + 1 AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC ..(((((....((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))...)).)))................. ( -41.80) >DroEre_CAF1 4476 102 + 1 AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAACGCCACCAUGAUCAACACCCACC ..(((......((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))......)))................. ( -40.80) >DroYak_CAF1 4123 102 + 1 AAGUGCAAUCCGCCGCCGCCGAAAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC ..(((((....((((((((((...(((((....(((.((..((....)).)).)))....))))).))))))))))...)).)))................. ( -41.80) >DroMoj_CAF1 8325 83 + 1 ----GCAAUCGGCUGUCGCCGAGAUGCAGAAGCUGCA---GGUGAGCG------------CUGCAGUUGCCGCUGCAAAUGCGAGCAUGUUGAACACGCAUC ----(((.(((((....)))))..(((((.(((((((---((....).------------))))))))....)))))..)))..((.((.....)).))... ( -33.20) >consensus AAGUGCAAUCCGCCGCCGCCGAGAUGCAGAAGAUGCAACAGGUGAACGCGGUGGCAGUGGCUGCGGCGGCGGCGGCCAAUGCCACCAUGAUCAACACCCACC ....(((..(((((((((((....((((.....))))..........(((((.......))))))))))))))))....))).................... (-33.90 = -34.55 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:40 2006